Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC29.02■■■□□ 2.24
MSH6P52701 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC29.01■■■□□ 2.24
MSH6P52701 RNF146-204ENST00000476956 884 ntTSL 2 BASIC29.01■■■□□ 2.24
MSH6P52701 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC29.01■■■□□ 2.24
MSH6P52701 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC29.01■■■□□ 2.24
MSH6P52701 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC29.01■■■□□ 2.24
MSH6P52701 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
MSH6P52701 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
MSH6P52701 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
MSH6P52701 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
MSH6P52701 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
MSH6P52701 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC29.01■■■□□ 2.23
MSH6P52701 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC29.01■■■□□ 2.23
MSH6P52701 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC29.01■■■□□ 2.23
MSH6P52701 AC007322.3-201ENST00000426526 701 ntBASIC29.01■■■□□ 2.23
MSH6P52701 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC29.01■■■□□ 2.23
MSH6P52701 CABP2-204ENST00000636477 941 ntTSL 5 BASIC29.01■■■□□ 2.23
MSH6P52701 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC29.01■■■□□ 2.23
MSH6P52701 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC29■■■□□ 2.23
MSH6P52701 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
MSH6P52701 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
MSH6P52701 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC29■■■□□ 2.23
MSH6P52701 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC29■■■□□ 2.23
MSH6P52701 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC29■■■□□ 2.23
MSH6P52701 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC29■■■□□ 2.23
MSH6P52701 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC29■■■□□ 2.23
MSH6P52701 AC026471.5-201ENST00000615068 467 ntBASIC29■■■□□ 2.23
MSH6P52701 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC29■■■□□ 2.23
MSH6P52701 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC29■■■□□ 2.23
MSH6P52701 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC28.99■■■□□ 2.23
MSH6P52701 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
MSH6P52701 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
MSH6P52701 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
MSH6P52701 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
MSH6P52701 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC28.99■■■□□ 2.23
MSH6P52701 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC28.99■■■□□ 2.23
MSH6P52701 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC28.99■■■□□ 2.23
MSH6P52701 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC28.99■■■□□ 2.23
MSH6P52701 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC28.99■■■□□ 2.23
MSH6P52701 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
MSH6P52701 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC28.98■■■□□ 2.23
MSH6P52701 GGT1-206ENST00000404223 952 ntTSL 2 BASIC28.98■■■□□ 2.23
MSH6P52701 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
MSH6P52701 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
MSH6P52701 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC28.98■■■□□ 2.23
MSH6P52701 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
MSH6P52701 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
MSH6P52701 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC28.98■■■□□ 2.23
MSH6P52701 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC28.97■■■□□ 2.23
MSH6P52701 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC28.97■■■□□ 2.23
MSH6P52701 AC137767.1-201ENST00000602918 1920 ntBASIC28.97■■■□□ 2.23
MSH6P52701 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 MMP23A-201ENST00000234610 1017 ntBASIC28.97■■■□□ 2.23
MSH6P52701 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC28.97■■■□□ 2.23
MSH6P52701 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC28.97■■■□□ 2.23
MSH6P52701 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC28.97■■■□□ 2.23
MSH6P52701 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
MSH6P52701 AC120498.8-201ENST00000614275 531 ntBASIC28.97■■■□□ 2.23
MSH6P52701 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
MSH6P52701 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC28.96■■■□□ 2.23
MSH6P52701 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC28.96■■■□□ 2.23
MSH6P52701 AP003071.4-201ENST00000562276 1284 ntBASIC28.96■■■□□ 2.23
MSH6P52701 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
MSH6P52701 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
MSH6P52701 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
MSH6P52701 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
MSH6P52701 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC28.95■■■□□ 2.23
MSH6P52701 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC28.95■■■□□ 2.23
MSH6P52701 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC28.95■■■□□ 2.23
MSH6P52701 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.22
MSH6P52701 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
MSH6P52701 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC28.95■■■□□ 2.22
MSH6P52701 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
MSH6P52701 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
MSH6P52701 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC28.94■■■□□ 2.22
MSH6P52701 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
MSH6P52701 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
MSH6P52701 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
MSH6P52701 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC28.94■■■□□ 2.22
MSH6P52701 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC28.94■■■□□ 2.22
MSH6P52701 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
MSH6P52701 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC28.94■■■□□ 2.22
MSH6P52701 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
MSH6P52701 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
MSH6P52701 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
MSH6P52701 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC28.93■■■□□ 2.22
MSH6P52701 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
MSH6P52701 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC28.93■■■□□ 2.22
MSH6P52701 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC28.93■■■□□ 2.22
MSH6P52701 PTPA-214ENST00000423100 988 ntTSL 2 BASIC28.93■■■□□ 2.22
MSH6P52701 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC28.93■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms