Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 NTO1YPR031W 2247 nt3□□□□□ -1.93
UPF3P48412 YLR446WYLR446W 1302 nt3□□□□□ -1.93
UPF3P48412 snR9snR9 187 nt3□□□□□ -1.93
UPF3P48412 MIX14YDR031W 366 nt3□□□□□ -1.93
UPF3P48412 BMH2YDR099W 822 nt3□□□□□ -1.93
UPF3P48412 Q0144Q0144 330 nt3□□□□□ -1.93
UPF3P48412 PEX18YHR160C 852 nt3□□□□□ -1.93
UPF3P48412 YIL175WYIL175W 318 nt3□□□□□ -1.93
UPF3P48412 YJL222W-BYJL222W-B 138 nt3□□□□□ -1.93
UPF3P48412 YOL085W-AYOL085W-A 213 nt3□□□□□ -1.93
UPF3P48412 CCT7YJL111W 1653 nt3□□□□□ -1.93
UPF3P48412 PSK2YOL045W 3306 nt3□□□□□ -1.93
UPF3P48412 BFR1YOR198C 1413 nt3□□□□□ -1.93
UPF3P48412 UBX3YDL091C 1368 nt3□□□□□ -1.93
UPF3P48412 RPA190YOR341W 4995 nt2.99□□□□□ -1.93
UPF3P48412 NDT80YHR124W 1884 nt2.99□□□□□ -1.93
UPF3P48412 DUG2YBR281C 2637 nt2.99□□□□□ -1.93
UPF3P48412 NPR1YNL183C 2373 nt2.99□□□□□ -1.93
UPF3P48412 YDR090CYDR090C 933 nt2.99□□□□□ -1.93
UPF3P48412 TIM11YDR322C-A 291 nt2.99□□□□□ -1.93
UPF3P48412 DYN2YDR424C 279 nt2.99□□□□□ -1.93
UPF3P48412 YKL091CYKL091C 933 nt2.99□□□□□ -1.93
UPF3P48412 SDO1YLR022C 753 nt2.99□□□□□ -1.93
UPF3P48412 YNL150WYNL150W 408 nt2.99□□□□□ -1.93
UPF3P48412 ATG3YNR007C 933 nt2.99□□□□□ -1.93
UPF3P48412 YPR170CYPR170C 336 nt2.99□□□□□ -1.93
UPF3P48412 COG3YER157W 2406 nt2.99□□□□□ -1.93
UPF3P48412 JJJ1YNL227C 1773 nt2.98□□□□□ -1.93
UPF3P48412 FAR7YFR008W 666 nt2.98□□□□□ -1.93
UPF3P48412 PRP38YGR075C 729 nt2.98□□□□□ -1.93
UPF3P48412 YNL235CYNL235C 432 nt2.98□□□□□ -1.93
UPF3P48412 TPK2YPL203W 1143 nt2.98□□□□□ -1.93
UPF3P48412 YPR147CYPR147C 915 nt2.98□□□□□ -1.93
UPF3P48412 DBP7YKR024C 2229 nt2.98□□□□□ -1.93
UPF3P48412 CWC22YGR278W 1734 nt2.98□□□□□ -1.93
UPF3P48412 ECM21YBL101C 3354 nt2.98□□□□□ -1.93
UPF3P48412 GCV2YMR189W 3105 nt2.97□□□□□ -1.93
UPF3P48412 TOM1YDR457W 9807 nt2.97□□□□□ -1.93
UPF3P48412 YDL163WYDL163W 303 nt2.97□□□□□ -1.93
UPF3P48412 TMA20YER007C-A 546 nt2.97□□□□□ -1.93
UPF3P48412 RPS26BYER131W 360 nt2.97□□□□□ -1.93
UPF3P48412 YMR31YFR049W 372 nt2.97□□□□□ -1.93
UPF3P48412 YIL068W-AYIL068W-A 384 nt2.97□□□□□ -1.93
UPF3P48412 NYV1YLR093C 762 nt2.97□□□□□ -1.93
UPF3P48412 VID24YBR105C 1089 nt2.97□□□□□ -1.93
UPF3P48412 ROM1YGR070W 3468 nt2.97□□□□□ -1.93
UPF3P48412 VHR1YIL056W 1923 nt2.97□□□□□ -1.93
UPF3P48412 RLF2YPR018W 1821 nt2.96□□□□□ -1.94
UPF3P48412 FLO5YHR211W 3228 nt2.96□□□□□ -1.94
UPF3P48412 BAS1YKR099W 2436 nt2.96□□□□□ -1.94
UPF3P48412 UBC5YDR059C 447 nt2.96□□□□□ -1.94
UPF3P48412 HPA3YEL066W 540 nt2.96□□□□□ -1.94
UPF3P48412 VMA21YGR105W 234 nt2.96□□□□□ -1.94
UPF3P48412 RPL27AYHR010W 411 nt2.96□□□□□ -1.94
UPF3P48412 SDL1YIL167W 633 nt2.96□□□□□ -1.94
UPF3P48412 YKL023C-AYKL023C-A 228 nt2.96□□□□□ -1.94
UPF3P48412 REC102YLR329W 795 nt2.96□□□□□ -1.94
UPF3P48412 YMR173W-AYMR173W-A 1185 nt2.96□□□□□ -1.94
UPF3P48412 YMR254CYMR254C 309 nt2.96□□□□□ -1.94
UPF3P48412 BUD21YOR078W 645 nt2.96□□□□□ -1.94
UPF3P48412 MFB1YDR219C 1398 nt2.96□□□□□ -1.94
UPF3P48412 NEL1YHR035W 1893 nt2.95□□□□□ -1.94
UPF3P48412 YDR115WYDR115W 318 nt2.95□□□□□ -1.94
UPF3P48412 PAU10YDR542W 363 nt2.95□□□□□ -1.94
UPF3P48412 PAU11YGL261C 363 nt2.95□□□□□ -1.94
UPF3P48412 tQ(UUG)BtQ(UUG)B 72 nt2.95□□□□□ -1.94
UPF3P48412 PAU4YLR461W 363 nt2.95□□□□□ -1.94
UPF3P48412 ATP18YML081C-A 180 nt2.95□□□□□ -1.94
UPF3P48412 MRPL16YBL038W 699 nt2.95□□□□□ -1.94
UPF3P48412 ERG29YMR134W 714 nt2.95□□□□□ -1.94
UPF3P48412 OST2YOR103C 393 nt2.95□□□□□ -1.94
UPF3P48412 YPR014CYPR014C 330 nt2.95□□□□□ -1.94
UPF3P48412 BPT1YLL015W 4680 nt2.95□□□□□ -1.94
UPF3P48412 NCS2YNL119W 1482 nt2.95□□□□□ -1.94
UPF3P48412 STD1YOR047C 1335 nt2.94□□□□□ -1.94
UPF3P48412 SRC1YML034W 2505 nt2.94□□□□□ -1.94
UPF3P48412 YTA7YGR270W 4140 nt2.94□□□□□ -1.94
UPF3P48412 YDR018CYDR018C 1191 nt2.94□□□□□ -1.94
UPF3P48412 YDR193WYDR193W 399 nt2.94□□□□□ -1.94
UPF3P48412 tF(GAA)DtF(GAA)D 73 nt2.94□□□□□ -1.94
UPF3P48412 tF(GAA)NtF(GAA)N 73 nt2.94□□□□□ -1.94
UPF3P48412 YER189WYER189W 369 nt2.94□□□□□ -1.94
UPF3P48412 ERV1YGR029W 570 nt2.94□□□□□ -1.94
UPF3P48412 LRP1YHR081W 555 nt2.94□□□□□ -1.94
UPF3P48412 YLR224WYLR224W 1110 nt2.94□□□□□ -1.94
UPF3P48412 PDP3YLR455W 915 nt2.94□□□□□ -1.94
UPF3P48412 YOR073W-AYOR073W-A 234 nt2.94□□□□□ -1.94
UPF3P48412 MOT1YPL082C 5604 nt2.94□□□□□ -1.94
UPF3P48412 CTF13YMR094W 1437 nt2.93□□□□□ -1.94
UPF3P48412 NAB3YPL190C 2409 nt2.93□□□□□ -1.94
UPF3P48412 snR59snR59 78 nt2.93□□□□□ -1.94
UPF3P48412 CKA1YIL035C 1119 nt2.93□□□□□ -1.94
UPF3P48412 YOL134CYOL134C 390 nt2.93□□□□□ -1.94
UPF3P48412 HSP10YOR020C 321 nt2.93□□□□□ -1.94
UPF3P48412 ALG14YBR070C 714 nt2.93□□□□□ -1.94
UPF3P48412 MUD1YBR119W 897 nt2.93□□□□□ -1.94
UPF3P48412 SHE4YOR035C 2370 nt2.93□□□□□ -1.94
UPF3P48412 TRZ1YKR079C 2517 nt2.92□□□□□ -1.94
UPF3P48412 GCD6YDR211W 2139 nt2.92□□□□□ -1.94
UPF3P48412 YDR179W-AYDR179W-A 1392 nt2.92□□□□□ -1.94
Retrieved 100 of 7,029 protein–RNA pairs in 33.2 ms