Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.05
PTPN9P43378 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
PTPN9P43378 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN9P43378 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN9P43378 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.58■■□□□ 1.05
PTPN9P43378 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PTPN9P43378 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.58■■□□□ 1.05
PTPN9P43378 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
PTPN9P43378 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
PTPN9P43378 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
PTPN9P43378 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PTPN9P43378 AC116050.2-201ENST00000612102 1779 ntBASIC21.58■■□□□ 1.04
PTPN9P43378 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.58■■□□□ 1.04
PTPN9P43378 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PTPN9P43378 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
PTPN9P43378 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PTPN9P43378 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.57■■□□□ 1.04
PTPN9P43378 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN9P43378 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
PTPN9P43378 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
PTPN9P43378 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN9P43378 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
PTPN9P43378 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN9P43378 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PTPN9P43378 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.57■■□□□ 1.04
PTPN9P43378 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.57■■□□□ 1.04
PTPN9P43378 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.57■■□□□ 1.04
PTPN9P43378 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.56■■□□□ 1.04
PTPN9P43378 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.56■■□□□ 1.04
PTPN9P43378 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
PTPN9P43378 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PTPN9P43378 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC21.56■■□□□ 1.04
PTPN9P43378 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.56■■□□□ 1.04
PTPN9P43378 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PTPN9P43378 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.56■■□□□ 1.04
PTPN9P43378 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.56■■□□□ 1.04
PTPN9P43378 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.56■■□□□ 1.04
PTPN9P43378 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.56■■□□□ 1.04
PTPN9P43378 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PTPN9P43378 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
PTPN9P43378 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 AC007322.4-201ENST00000509611 723 ntBASIC21.55■■□□□ 1.04
PTPN9P43378 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.55■■□□□ 1.04
PTPN9P43378 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.55■■□□□ 1.04
PTPN9P43378 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.55■■□□□ 1.04
PTPN9P43378 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.55■■□□□ 1.04
PTPN9P43378 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PTPN9P43378 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
PTPN9P43378 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.55■■□□□ 1.04
PTPN9P43378 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PTPN9P43378 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.54■■□□□ 1.04
PTPN9P43378 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
PTPN9P43378 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.54■■□□□ 1.04
PTPN9P43378 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.54■■□□□ 1.04
PTPN9P43378 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.54■■□□□ 1.04
PTPN9P43378 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.54■■□□□ 1.04
PTPN9P43378 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 DUX4L16-201ENST00000555130 1264 ntBASIC21.54■■□□□ 1.04
PTPN9P43378 AC011767.1-201ENST00000617410 1153 ntBASIC21.54■■□□□ 1.04
PTPN9P43378 AC013268.1-206ENST00000638368 961 ntBASIC21.54■■□□□ 1.04
PTPN9P43378 AC112229.1-201ENST00000639295 961 ntBASIC21.54■■□□□ 1.04
PTPN9P43378 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.54■■□□□ 1.04
PTPN9P43378 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PTPN9P43378 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN9P43378 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN9P43378 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
PTPN9P43378 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PTPN9P43378 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.53■■□□□ 1.04
PTPN9P43378 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.53■■□□□ 1.04
PTPN9P43378 BID-214ENST00000617586 542 ntTSL 5 BASIC21.53■■□□□ 1.04
PTPN9P43378 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.53■■□□□ 1.04
PTPN9P43378 AC092437.1-201ENST00000624794 1048 ntBASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms