Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RPS2P55-201ENST00000397318 883 ntBASIC35.15■■■■□ 3.22
CUX1P39880 AC133681.1-201ENST00000465482 601 ntBASIC35.15■■■■□ 3.22
CUX1P39880 AC107956.1-201ENST00000494359 873 ntBASIC35.15■■■■□ 3.22
CUX1P39880 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC35.15■■■■□ 3.22
CUX1P39880 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC35.15■■■■□ 3.22
CUX1P39880 AC010331.1-201ENST00000611423 582 ntBASIC35.15■■■■□ 3.22
CUX1P39880 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC35.15■■■■□ 3.22
CUX1P39880 STX5-203ENST00000394690 1568 ntTSL 5 BASIC35.15■■■■□ 3.22
CUX1P39880 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC35.15■■■■□ 3.22
CUX1P39880 AC087633.2-202ENST00000565166 1439 ntBASIC35.14■■■■□ 3.22
CUX1P39880 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC35.14■■■■□ 3.22
CUX1P39880 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC35.14■■■■□ 3.22
CUX1P39880 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC35.14■■■■□ 3.22
CUX1P39880 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC35.14■■■■□ 3.22
CUX1P39880 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC35.14■■■■□ 3.22
CUX1P39880 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC35.14■■■■□ 3.22
CUX1P39880 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC35.13■■■■□ 3.22
CUX1P39880 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC35.13■■■■□ 3.22
CUX1P39880 AC127496.7-201ENST00000625110 1798 ntBASIC35.13■■■■□ 3.21
CUX1P39880 FAM99A-202ENST00000538190 1989 ntBASIC35.13■■■■□ 3.21
CUX1P39880 MIR1224-201ENST00000408193 85 ntBASIC35.13■■■■□ 3.21
CUX1P39880 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
CUX1P39880 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC35.13■■■■□ 3.21
CUX1P39880 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC35.13■■■■□ 3.21
CUX1P39880 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
CUX1P39880 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
CUX1P39880 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
CUX1P39880 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
CUX1P39880 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC35.13■■■■□ 3.21
CUX1P39880 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
CUX1P39880 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
CUX1P39880 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC35.12■■■■□ 3.21
CUX1P39880 MAX-217ENST00000557277 728 ntTSL 3 BASIC35.12■■■■□ 3.21
CUX1P39880 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC35.12■■■■□ 3.21
CUX1P39880 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
CUX1P39880 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC35.12■■■■□ 3.21
CUX1P39880 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC35.11■■■■□ 3.21
CUX1P39880 HES2-205ENST00000487437 968 ntTSL 3 BASIC35.11■■■■□ 3.21
CUX1P39880 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC35.11■■■■□ 3.21
CUX1P39880 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC35.11■■■■□ 3.21
CUX1P39880 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC35.11■■■■□ 3.21
CUX1P39880 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC35.11■■■■□ 3.21
CUX1P39880 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC35.11■■■■□ 3.21
CUX1P39880 LY6E-205ENST00000519611 635 ntTSL 3 BASIC35.11■■■■□ 3.21
CUX1P39880 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC35.11■■■■□ 3.21
CUX1P39880 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CUX1P39880 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC35.11■■■■□ 3.21
CUX1P39880 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC35.11■■■■□ 3.21
CUX1P39880 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CUX1P39880 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC35.11■■■■□ 3.21
CUX1P39880 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC35.11■■■■□ 3.21
CUX1P39880 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC35.1■■■■□ 3.21
CUX1P39880 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC35.1■■■■□ 3.21
CUX1P39880 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
CUX1P39880 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
CUX1P39880 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
CUX1P39880 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
CUX1P39880 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC35.09■■■■□ 3.21
CUX1P39880 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC35.09■■■■□ 3.21
CUX1P39880 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
CUX1P39880 NXN-202ENST00000537628 1340 ntTSL 3 BASIC35.08■■■■□ 3.21
CUX1P39880 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC35.08■■■■□ 3.21
CUX1P39880 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
CUX1P39880 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
CUX1P39880 AL049637.2-201ENST00000641778 930 ntBASIC35.08■■■■□ 3.21
CUX1P39880 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC35.08■■■■□ 3.21
CUX1P39880 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
CUX1P39880 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
CUX1P39880 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC35.08■■■■□ 3.21
CUX1P39880 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
CUX1P39880 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
CUX1P39880 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.21
CUX1P39880 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC35.07■■■■□ 3.21
CUX1P39880 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC35.07■■■■□ 3.21
CUX1P39880 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC35.07■■■■□ 3.21
CUX1P39880 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC35.07■■■■□ 3.21
CUX1P39880 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC35.07■■■■□ 3.2
CUX1P39880 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC35.07■■■■□ 3.2
CUX1P39880 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC35.07■■■■□ 3.2
CUX1P39880 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
CUX1P39880 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
CUX1P39880 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC35.07■■■■□ 3.2
CUX1P39880 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
CUX1P39880 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
CUX1P39880 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
CUX1P39880 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
CUX1P39880 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
CUX1P39880 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
CUX1P39880 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
CUX1P39880 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
CUX1P39880 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC35.06■■■■□ 3.2
CUX1P39880 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC35.06■■■■□ 3.2
CUX1P39880 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
CUX1P39880 TSPY15P-201ENST00000457163 923 ntBASIC35.06■■■■□ 3.2
CUX1P39880 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC35.06■■■■□ 3.2
CUX1P39880 DHDH-203ENST00000522614 776 ntTSL 5 BASIC35.06■■■■□ 3.2
CUX1P39880 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC35.06■■■■□ 3.2
CUX1P39880 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC35.05■■■■□ 3.2
CUX1P39880 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
CUX1P39880 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms