Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC25.65■■□□□ 1.7
BRCA1P38398 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
BRCA1P38398 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
BRCA1P38398 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
BRCA1P38398 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC25.65■■□□□ 1.7
BRCA1P38398 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
BRCA1P38398 PRKY-204ENST00000533551 1019 ntBASIC25.65■■□□□ 1.7
BRCA1P38398 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
BRCA1P38398 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC25.65■■□□□ 1.7
BRCA1P38398 C11orf96-202ENST00000528572 1834 ntBASIC25.65■■□□□ 1.7
BRCA1P38398 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC25.65■■□□□ 1.7
BRCA1P38398 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC25.65■■□□□ 1.7
BRCA1P38398 AC087742.1-201ENST00000575880 1738 ntBASIC25.65■■□□□ 1.7
BRCA1P38398 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC25.64■■□□□ 1.7
BRCA1P38398 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
BRCA1P38398 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC25.64■■□□□ 1.7
BRCA1P38398 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC25.64■■□□□ 1.7
BRCA1P38398 AC139530.1-201ENST00000575312 1977 ntBASIC25.64■■□□□ 1.7
BRCA1P38398 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC25.64■■□□□ 1.69
BRCA1P38398 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.64■■□□□ 1.69
BRCA1P38398 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC25.63■■□□□ 1.69
BRCA1P38398 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
BRCA1P38398 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
BRCA1P38398 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC25.63■■□□□ 1.69
BRCA1P38398 RBM42-202ENST00000586618 771 ntTSL 3 BASIC25.63■■□□□ 1.69
BRCA1P38398 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.63■■□□□ 1.69
BRCA1P38398 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
BRCA1P38398 KRT8P9-201ENST00000558927 1449 ntBASIC25.63■■□□□ 1.69
BRCA1P38398 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
BRCA1P38398 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
BRCA1P38398 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
BRCA1P38398 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
BRCA1P38398 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
BRCA1P38398 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC25.62■■□□□ 1.69
BRCA1P38398 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC25.62■■□□□ 1.69
BRCA1P38398 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
BRCA1P38398 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC25.62■■□□□ 1.69
BRCA1P38398 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC25.62■■□□□ 1.69
BRCA1P38398 CABP2-204ENST00000636477 941 ntTSL 5 BASIC25.62■■□□□ 1.69
BRCA1P38398 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
BRCA1P38398 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
BRCA1P38398 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC25.62■■□□□ 1.69
BRCA1P38398 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
BRCA1P38398 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.62■■□□□ 1.69
BRCA1P38398 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC25.62■■□□□ 1.69
BRCA1P38398 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
BRCA1P38398 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
BRCA1P38398 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.61■■□□□ 1.69
BRCA1P38398 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
BRCA1P38398 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
BRCA1P38398 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
BRCA1P38398 NUDT16P1-203ENST00000513809 620 ntBASIC25.61■■□□□ 1.69
BRCA1P38398 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
BRCA1P38398 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
BRCA1P38398 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
BRCA1P38398 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
BRCA1P38398 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
BRCA1P38398 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
BRCA1P38398 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
BRCA1P38398 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
BRCA1P38398 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
BRCA1P38398 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
BRCA1P38398 SERP1-205ENST00000487153 657 ntTSL 4 BASIC25.6■■□□□ 1.69
BRCA1P38398 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC25.6■■□□□ 1.69
BRCA1P38398 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC25.6■■□□□ 1.69
BRCA1P38398 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC25.6■■□□□ 1.69
BRCA1P38398 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC25.6■■□□□ 1.69
BRCA1P38398 NXN-202ENST00000537628 1340 ntTSL 3 BASIC25.6■■□□□ 1.69
BRCA1P38398 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
BRCA1P38398 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
BRCA1P38398 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC25.6■■□□□ 1.69
BRCA1P38398 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC25.6■■□□□ 1.69
BRCA1P38398 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
BRCA1P38398 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
BRCA1P38398 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
BRCA1P38398 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC25.59■■□□□ 1.69
BRCA1P38398 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
BRCA1P38398 GGT1-206ENST00000404223 952 ntTSL 2 BASIC25.59■■□□□ 1.69
BRCA1P38398 AC113347.1-201ENST00000413321 391 ntBASIC25.59■■□□□ 1.69
BRCA1P38398 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
BRCA1P38398 AP003071.4-201ENST00000562276 1284 ntBASIC25.59■■□□□ 1.69
BRCA1P38398 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC25.59■■□□□ 1.69
BRCA1P38398 NT5C-211ENST00000582170 653 ntTSL 3 BASIC25.59■■□□□ 1.69
BRCA1P38398 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
BRCA1P38398 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
BRCA1P38398 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.59■■□□□ 1.69
BRCA1P38398 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
BRCA1P38398 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC25.58■■□□□ 1.69
BRCA1P38398 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC25.58■■□□□ 1.69
BRCA1P38398 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC25.58■■□□□ 1.69
BRCA1P38398 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC25.58■■□□□ 1.69
BRCA1P38398 AC026471.5-201ENST00000615068 467 ntBASIC25.58■■□□□ 1.69
BRCA1P38398 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC25.58■■□□□ 1.69
BRCA1P38398 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC25.58■■□□□ 1.69
BRCA1P38398 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC25.58■■□□□ 1.69
BRCA1P38398 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC25.58■■□□□ 1.69
BRCA1P38398 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC25.58■■□□□ 1.69
BRCA1P38398 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
BRCA1P38398 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.68
BRCA1P38398 NFE2L3P1-201ENST00000588207 1959 ntBASIC25.58■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms