Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL8A1P27658 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL8A1P27658 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.16■□□□□ 0.5
COL8A1P27658 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL8A1P27658 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL8A1P27658 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL8A1P27658 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL8A1P27658 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL8A1P27658 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL8A1P27658 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.16■□□□□ 0.5
COL8A1P27658 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL8A1P27658 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.16■□□□□ 0.5
COL8A1P27658 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL8A1P27658 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL8A1P27658 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL8A1P27658 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL8A1P27658 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.15■□□□□ 0.5
COL8A1P27658 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.15■□□□□ 0.5
COL8A1P27658 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.15■□□□□ 0.5
COL8A1P27658 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.15■□□□□ 0.5
COL8A1P27658 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.15■□□□□ 0.5
COL8A1P27658 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.15■□□□□ 0.5
COL8A1P27658 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.15■□□□□ 0.5
COL8A1P27658 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
COL8A1P27658 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL8A1P27658 AC004812.2-201ENST00000611079 2094 ntBASIC18.14■□□□□ 0.5
COL8A1P27658 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL8A1P27658 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL8A1P27658 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL8A1P27658 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL8A1P27658 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.14■□□□□ 0.49
COL8A1P27658 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL8A1P27658 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL8A1P27658 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL8A1P27658 AC239809.2-201ENST00000415381 517 ntBASIC18.14■□□□□ 0.49
COL8A1P27658 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.14■□□□□ 0.49
COL8A1P27658 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.14■□□□□ 0.49
COL8A1P27658 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.14■□□□□ 0.49
COL8A1P27658 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.14■□□□□ 0.49
COL8A1P27658 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL8A1P27658 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.14■□□□□ 0.49
COL8A1P27658 FAM21FP-204ENST00000608637 956 ntBASIC18.14■□□□□ 0.49
COL8A1P27658 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL8A1P27658 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL8A1P27658 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL8A1P27658 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.14■□□□□ 0.49
COL8A1P27658 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
COL8A1P27658 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL8A1P27658 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.14■□□□□ 0.49
COL8A1P27658 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
COL8A1P27658 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.13■□□□□ 0.49
COL8A1P27658 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.13■□□□□ 0.49
COL8A1P27658 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.13■□□□□ 0.49
COL8A1P27658 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.13■□□□□ 0.49
COL8A1P27658 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.13■□□□□ 0.49
COL8A1P27658 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 AC100791.3-201ENST00000617619 330 ntBASIC18.13■□□□□ 0.49
COL8A1P27658 AC092865.7-201ENST00000641832 219 ntBASIC18.13■□□□□ 0.49
COL8A1P27658 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
COL8A1P27658 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.13■□□□□ 0.49
COL8A1P27658 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.13■□□□□ 0.49
COL8A1P27658 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 AL135905.2-201ENST00000584934 1404 ntBASIC18.13■□□□□ 0.49
COL8A1P27658 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.13■□□□□ 0.49
COL8A1P27658 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL8A1P27658 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL8A1P27658 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL8A1P27658 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL8A1P27658 KRT18P68-201ENST00000392293 1000 ntBASIC18.12■□□□□ 0.49
COL8A1P27658 MCRIP2P1-201ENST00000394346 511 ntBASIC18.12■□□□□ 0.49
COL8A1P27658 KRASP1-201ENST00000407852 552 ntBASIC18.12■□□□□ 0.49
COL8A1P27658 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.12■□□□□ 0.49
COL8A1P27658 AC091799.1-201ENST00000422823 811 ntBASIC18.12■□□□□ 0.49
COL8A1P27658 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL8A1P27658 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.12■□□□□ 0.49
COL8A1P27658 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.12■□□□□ 0.49
COL8A1P27658 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.12■□□□□ 0.49
COL8A1P27658 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms