Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.55■□□□□ 0.4
USF1P22415 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USF1P22415 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
USF1P22415 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
USF1P22415 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC17.54■□□□□ 0.4
USF1P22415 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.54■□□□□ 0.4
USF1P22415 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.54■□□□□ 0.4
USF1P22415 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.54■□□□□ 0.4
USF1P22415 AC093827.2-201ENST00000512654 315 ntBASIC17.54■□□□□ 0.4
USF1P22415 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.54■□□□□ 0.4
USF1P22415 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.54■□□□□ 0.4
USF1P22415 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.54■□□□□ 0.4
USF1P22415 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 RBM17P2-201ENST00000616397 1405 ntBASIC17.54■□□□□ 0.4
USF1P22415 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
USF1P22415 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
USF1P22415 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.53■□□□□ 0.4
USF1P22415 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.53■□□□□ 0.4
USF1P22415 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.53■□□□□ 0.4
USF1P22415 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.53■□□□□ 0.4
USF1P22415 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USF1P22415 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC17.53■□□□□ 0.4
USF1P22415 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.53■□□□□ 0.4
USF1P22415 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
USF1P22415 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.53■□□□□ 0.4
USF1P22415 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
USF1P22415 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.53■□□□□ 0.4
USF1P22415 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.53■□□□□ 0.4
USF1P22415 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.53■□□□□ 0.4
USF1P22415 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
USF1P22415 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF1P22415 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USF1P22415 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF1P22415 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF1P22415 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.52■□□□□ 0.4
USF1P22415 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USF1P22415 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.52■□□□□ 0.4
USF1P22415 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF1P22415 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.52■□□□□ 0.4
USF1P22415 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.52■□□□□ 0.4
USF1P22415 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.52■□□□□ 0.4
USF1P22415 AC243732.1-201ENST00000612648 864 ntBASIC17.52■□□□□ 0.4
USF1P22415 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USF1P22415 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC17.52■□□□□ 0.4
USF1P22415 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
USF1P22415 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
USF1P22415 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
USF1P22415 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.52■□□□□ 0.39
USF1P22415 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.52■□□□□ 0.39
USF1P22415 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC17.51■□□□□ 0.39
USF1P22415 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
USF1P22415 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
USF1P22415 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 RARRES2P4-201ENST00000514074 484 ntBASIC17.51■□□□□ 0.39
USF1P22415 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.51■□□□□ 0.39
USF1P22415 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.51■□□□□ 0.39
USF1P22415 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.51■□□□□ 0.39
USF1P22415 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.51■□□□□ 0.39
USF1P22415 AC010980.2-201ENST00000587099 1412 ntBASIC17.51■□□□□ 0.39
USF1P22415 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
USF1P22415 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.51■□□□□ 0.39
USF1P22415 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.51■□□□□ 0.39
USF1P22415 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
USF1P22415 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms