Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.5■□□□□ 0.71
CLPTM1O96005 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.5■□□□□ 0.71
CLPTM1O96005 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
CLPTM1O96005 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CLPTM1O96005 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CLPTM1O96005 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CLPTM1O96005 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.49■□□□□ 0.71
CLPTM1O96005 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 AC131281.2-201ENST00000520478 145 ntBASIC19.49■□□□□ 0.71
CLPTM1O96005 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.49■□□□□ 0.71
CLPTM1O96005 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.49■□□□□ 0.71
CLPTM1O96005 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.49■□□□□ 0.71
CLPTM1O96005 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 AC006128.1-201ENST00000624704 1661 ntBASIC19.49■□□□□ 0.71
CLPTM1O96005 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLPTM1O96005 AC112907.3-201ENST00000577781 2400 ntBASIC19.49■□□□□ 0.71
CLPTM1O96005 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.48■□□□□ 0.71
CLPTM1O96005 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CLPTM1O96005 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CLPTM1O96005 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.48■□□□□ 0.71
CLPTM1O96005 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.48■□□□□ 0.71
CLPTM1O96005 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.48■□□□□ 0.71
CLPTM1O96005 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.48■□□□□ 0.71
CLPTM1O96005 AC026471.6-201ENST00000622954 1905 ntBASIC19.48■□□□□ 0.71
CLPTM1O96005 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLPTM1O96005 AC008406.3-201ENST00000620001 1374 ntBASIC19.47■□□□□ 0.71
CLPTM1O96005 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CLPTM1O96005 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CLPTM1O96005 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.47■□□□□ 0.71
CLPTM1O96005 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CLPTM1O96005 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 LINC01529-204ENST00000636474 1715 ntBASIC19.47■□□□□ 0.71
CLPTM1O96005 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.47■□□□□ 0.71
CLPTM1O96005 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLPTM1O96005 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.47■□□□□ 0.71
CLPTM1O96005 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.47■□□□□ 0.71
CLPTM1O96005 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CLPTM1O96005 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.46■□□□□ 0.71
CLPTM1O96005 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.46■□□□□ 0.71
CLPTM1O96005 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.46■□□□□ 0.71
CLPTM1O96005 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.46■□□□□ 0.71
CLPTM1O96005 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 AL512631.2-201ENST00000604634 923 ntBASIC19.46■□□□□ 0.71
CLPTM1O96005 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CLPTM1O96005 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
CLPTM1O96005 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CLPTM1O96005 AC116562.4-201ENST00000641316 2276 ntBASIC19.46■□□□□ 0.71
CLPTM1O96005 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.46■□□□□ 0.71
CLPTM1O96005 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CLPTM1O96005 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLPTM1O96005 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CLPTM1O96005 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLPTM1O96005 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CLPTM1O96005 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms