Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PROM1O43490 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PROM1O43490 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PROM1O43490 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.66■□□□□ 0.74
PROM1O43490 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
PROM1O43490 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.66■□□□□ 0.74
PROM1O43490 UBE2DNL-204ENST00000602536 740 ntBASIC19.66■□□□□ 0.74
PROM1O43490 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PROM1O43490 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.66■□□□□ 0.74
PROM1O43490 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PROM1O43490 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
PROM1O43490 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.66■□□□□ 0.74
PROM1O43490 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PROM1O43490 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PROM1O43490 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PROM1O43490 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PROM1O43490 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PROM1O43490 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PROM1O43490 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
PROM1O43490 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PROM1O43490 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.65■□□□□ 0.74
PROM1O43490 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.65■□□□□ 0.74
PROM1O43490 AC090192.1-201ENST00000517740 490 ntBASIC19.65■□□□□ 0.74
PROM1O43490 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.65■□□□□ 0.74
PROM1O43490 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.65■□□□□ 0.74
PROM1O43490 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.65■□□□□ 0.74
PROM1O43490 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
PROM1O43490 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.65■□□□□ 0.74
PROM1O43490 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.65■□□□□ 0.74
PROM1O43490 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PROM1O43490 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PROM1O43490 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PROM1O43490 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PROM1O43490 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PROM1O43490 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.64■□□□□ 0.73
PROM1O43490 AC137761.2-201ENST00000561729 223 ntBASIC19.64■□□□□ 0.73
PROM1O43490 AC145350.3-201ENST00000569033 163 ntBASIC19.64■□□□□ 0.73
PROM1O43490 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.64■□□□□ 0.73
PROM1O43490 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PROM1O43490 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
PROM1O43490 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PROM1O43490 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PROM1O43490 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PROM1O43490 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PROM1O43490 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
PROM1O43490 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
PROM1O43490 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PROM1O43490 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.64■□□□□ 0.73
PROM1O43490 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PROM1O43490 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PROM1O43490 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PROM1O43490 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.63■□□□□ 0.73
PROM1O43490 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PROM1O43490 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
PROM1O43490 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PROM1O43490 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.63■□□□□ 0.73
PROM1O43490 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PROM1O43490 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.63■□□□□ 0.73
PROM1O43490 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.63■□□□□ 0.73
PROM1O43490 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
PROM1O43490 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.63■□□□□ 0.73
PROM1O43490 AC245052.3-201ENST00000450182 901 ntBASIC19.63■□□□□ 0.73
PROM1O43490 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.63■□□□□ 0.73
PROM1O43490 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.63■□□□□ 0.73
PROM1O43490 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
PROM1O43490 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.63■□□□□ 0.73
PROM1O43490 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PROM1O43490 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.63■□□□□ 0.73
PROM1O43490 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.63■□□□□ 0.73
PROM1O43490 MYCNOS-205ENST00000641950 531 ntBASIC19.63■□□□□ 0.73
PROM1O43490 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.63■□□□□ 0.73
PROM1O43490 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.63■□□□□ 0.73
PROM1O43490 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
PROM1O43490 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PROM1O43490 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PROM1O43490 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PROM1O43490 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.62■□□□□ 0.73
PROM1O43490 KRT18P11-201ENST00000435214 1283 ntBASIC19.62■□□□□ 0.73
PROM1O43490 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.62■□□□□ 0.73
PROM1O43490 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PROM1O43490 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PROM1O43490 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.62■□□□□ 0.73
PROM1O43490 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.62■□□□□ 0.73
PROM1O43490 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
PROM1O43490 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.62■□□□□ 0.73
PROM1O43490 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PROM1O43490 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PROM1O43490 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PROM1O43490 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.61■□□□□ 0.73
PROM1O43490 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.61■□□□□ 0.73
PROM1O43490 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PROM1O43490 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
PROM1O43490 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PROM1O43490 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.61■□□□□ 0.73
PROM1O43490 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PROM1O43490 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PROM1O43490 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.61■□□□□ 0.73
PROM1O43490 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
PROM1O43490 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PROM1O43490 RBM17P2-201ENST00000616397 1405 ntBASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms