Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.22■□□□□ 0.99
CBX4O00257 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.22■□□□□ 0.99
CBX4O00257 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CBX4O00257 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CBX4O00257 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CBX4O00257 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CBX4O00257 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CBX4O00257 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CBX4O00257 AC091799.1-201ENST00000422823 811 ntBASIC21.21■□□□□ 0.99
CBX4O00257 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
CBX4O00257 CYP2T1P-201ENST00000432607 1285 ntBASIC21.21■□□□□ 0.99
CBX4O00257 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CBX4O00257 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.21■□□□□ 0.99
CBX4O00257 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.21■□□□□ 0.99
CBX4O00257 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.21■□□□□ 0.99
CBX4O00257 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CBX4O00257 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.2■□□□□ 0.98
CBX4O00257 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.2■□□□□ 0.98
CBX4O00257 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CBX4O00257 AL024507.2-201ENST00000606070 2574 ntBASIC21.2■□□□□ 0.98
CBX4O00257 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.2■□□□□ 0.98
CBX4O00257 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CBX4O00257 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.2■□□□□ 0.98
CBX4O00257 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
CBX4O00257 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.2■□□□□ 0.98
CBX4O00257 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.2■□□□□ 0.98
CBX4O00257 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.2■□□□□ 0.98
CBX4O00257 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CBX4O00257 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC21.2■□□□□ 0.98
CBX4O00257 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.2■□□□□ 0.98
CBX4O00257 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CBX4O00257 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CBX4O00257 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC21.2■□□□□ 0.98
CBX4O00257 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CBX4O00257 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CBX4O00257 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CBX4O00257 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
CBX4O00257 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
CBX4O00257 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.19■□□□□ 0.98
CBX4O00257 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CBX4O00257 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.19■□□□□ 0.98
CBX4O00257 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CBX4O00257 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CBX4O00257 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.19■□□□□ 0.98
CBX4O00257 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.19■□□□□ 0.98
CBX4O00257 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.19■□□□□ 0.98
CBX4O00257 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CBX4O00257 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CBX4O00257 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CBX4O00257 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CBX4O00257 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CBX4O00257 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CBX4O00257 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
CBX4O00257 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CBX4O00257 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CBX4O00257 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CBX4O00257 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CBX4O00257 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.18■□□□□ 0.98
CBX4O00257 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.18■□□□□ 0.98
CBX4O00257 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.18■□□□□ 0.98
CBX4O00257 AC008694.1-202ENST00000636953 945 ntBASIC21.18■□□□□ 0.98
CBX4O00257 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CBX4O00257 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CBX4O00257 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.18■□□□□ 0.98
CBX4O00257 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CBX4O00257 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CBX4O00257 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CBX4O00257 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CBX4O00257 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.18■□□□□ 0.98
CBX4O00257 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CBX4O00257 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CBX4O00257 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CBX4O00257 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CBX4O00257 GPX1P1-201ENST00000388829 606 ntBASIC21.17■□□□□ 0.98
CBX4O00257 AC083906.2-201ENST00000511578 360 ntBASIC21.17■□□□□ 0.98
CBX4O00257 AC069236.1-201ENST00000604339 616 ntBASIC21.17■□□□□ 0.98
CBX4O00257 AL121832.2-201ENST00000610979 668 ntBASIC21.17■□□□□ 0.98
CBX4O00257 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.17■□□□□ 0.98
CBX4O00257 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.17■□□□□ 0.98
CBX4O00257 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CBX4O00257 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.17■□□□□ 0.98
CBX4O00257 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CBX4O00257 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CBX4O00257 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.16■□□□□ 0.98
CBX4O00257 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CBX4O00257 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.16■□□□□ 0.98
CBX4O00257 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.16■□□□□ 0.98
CBX4O00257 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.16■□□□□ 0.98
CBX4O00257 AC016405.3-201ENST00000607710 860 ntBASIC21.16■□□□□ 0.98
CBX4O00257 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CBX4O00257 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms