Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMKR1H3BMG3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.14■□□□□ 0.01
SMKR1H3BMG3 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC15.14■□□□□ 0.01
SMKR1H3BMG3 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMKR1H3BMG3 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMKR1H3BMG3 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
SMKR1H3BMG3 STX4-202ENST00000394998 1498 ntTSL 2 BASIC15.14■□□□□ 0.01
SMKR1H3BMG3 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SMKR1H3BMG3 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 GTSE1-AS1-202ENST00000623117 1518 ntBASIC15.13■□□□□ 0.01
SMKR1H3BMG3 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 STX6-204ENST00000542060 4809 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 CD72-202ENST00000378430 585 ntTSL 3 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 Z92544.1-202ENST00000571933 1220 ntBASIC15.13■□□□□ 0.01
SMKR1H3BMG3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 AL031848.2-201ENST00000607670 837 ntBASIC15.13■□□□□ 0.01
SMKR1H3BMG3 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC15.13■□□□□ 0.01
SMKR1H3BMG3 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SMKR1H3BMG3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 BX664725.1-201ENST00000438252 379 ntBASIC15.11■□□□□ 0.01
SMKR1H3BMG3 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 pRNA.6-201ENST00000610482 90 ntBASIC15.11■□□□□ 0.01
SMKR1H3BMG3 pRNA.5-201ENST00000612139 90 ntBASIC15.11■□□□□ 0.01
SMKR1H3BMG3 pRNA.11-201ENST00000618423 90 ntBASIC15.11■□□□□ 0.01
SMKR1H3BMG3 pRNA.13-201ENST00000619112 90 ntBASIC15.11■□□□□ 0.01
SMKR1H3BMG3 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 AC099778.1-201ENST00000568593 1911 ntBASIC15.11■□□□□ 0.01
SMKR1H3BMG3 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC15.11■□□□□ 0.01
SMKR1H3BMG3 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMKR1H3BMG3 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMKR1H3BMG3 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMKR1H3BMG3 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SMKR1H3BMG3 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SMKR1H3BMG3 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC15.1■□□□□ 0.01
SMKR1H3BMG3 AP004607.7-201ENST00000527152 1677 ntBASIC15.1■□□□□ 0.01
SMKR1H3BMG3 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
SMKR1H3BMG3 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SMKR1H3BMG3 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms