Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 AC020907.5-201ENST00000624372 1936 ntBASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USH1CQ9Y6N9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.65■□□□□ 0.9
USH1CQ9Y6N9 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
USH1CQ9Y6N9 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USH1CQ9Y6N9 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USH1CQ9Y6N9 AC010141.3-201ENST00000456659 717 ntBASIC20.65■□□□□ 0.9
USH1CQ9Y6N9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USH1CQ9Y6N9 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USH1CQ9Y6N9 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USH1CQ9Y6N9 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USH1CQ9Y6N9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
USH1CQ9Y6N9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.64■□□□□ 0.9
USH1CQ9Y6N9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 AL034346.1-201ENST00000568244 1277 ntBASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.89
USH1CQ9Y6N9 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 OR2I1P-207ENST00000453522 948 ntBASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
USH1CQ9Y6N9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 SMG8-203ENST00000578922 2178 ntBASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.62■□□□□ 0.89
USH1CQ9Y6N9 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 AC239859.2-201ENST00000444165 318 ntBASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USH1CQ9Y6N9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
USH1CQ9Y6N9 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms