Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.73■■□□□ 1.07
PCDHA3Q9Y5H8 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA3Q9Y5H8 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA3Q9Y5H8 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA3Q9Y5H8 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
PCDHA3Q9Y5H8 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHA3Q9Y5H8 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.7■■□□□ 1.07
PCDHA3Q9Y5H8 AC011484.1-201ENST00000377652 1995 ntBASIC21.7■■□□□ 1.07
PCDHA3Q9Y5H8 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PCDHA3Q9Y5H8 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PCDHA3Q9Y5H8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
PCDHA3Q9Y5H8 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHA3Q9Y5H8 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHA3Q9Y5H8 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.7■■□□□ 1.06
PCDHA3Q9Y5H8 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 AC020907.5-201ENST00000624372 1936 ntBASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.69■■□□□ 1.06
PCDHA3Q9Y5H8 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 AL358852.1-201ENST00000623174 1268 ntBASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PCDHA3Q9Y5H8 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 AL121603.2-201ENST00000557373 2117 ntBASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PCDHA3Q9Y5H8 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 FP700111.2-201ENST00000619190 1892 ntBASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PCDHA3Q9Y5H8 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms