Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIMD1Q9UGP4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 PNMA6B-201ENST00000538162 1200 ntBASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMD1Q9UGP4 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 FAM21FP-204ENST00000608637 956 ntBASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 AC137767.1-201ENST00000602918 1920 ntBASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMD1Q9UGP4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 AC092368.3-202ENST00000574180 1591 ntBASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 AC233263.1-201ENST00000578059 224 ntBASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 AC010331.1-201ENST00000611423 582 ntBASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 AC100791.3-201ENST00000617619 330 ntBASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
LIMD1Q9UGP4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 AC091799.1-201ENST00000422823 811 ntBASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC21.66■■□□□ 1.06
LIMD1Q9UGP4 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 AL589743.5-201ENST00000616611 1050 ntBASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMD1Q9UGP4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
LIMD1Q9UGP4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms