Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
NDE1Q9NXR1 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.08■□□□□ 0.81
NDE1Q9NXR1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.08■□□□□ 0.81
NDE1Q9NXR1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
NDE1Q9NXR1 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.8
NDE1Q9NXR1 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.8
NDE1Q9NXR1 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NDE1Q9NXR1 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.08■□□□□ 0.8
NDE1Q9NXR1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NDE1Q9NXR1 AC018445.3-201ENST00000624177 1945 ntBASIC20.08■□□□□ 0.8
NDE1Q9NXR1 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
NDE1Q9NXR1 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 AC027702.1-201ENST00000563810 1770 ntBASIC20.06■□□□□ 0.8
NDE1Q9NXR1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 KRT8P33-201ENST00000508125 1423 ntBASIC20.06■□□□□ 0.8
NDE1Q9NXR1 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
NDE1Q9NXR1 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 AC121338.2-201ENST00000622535 1744 ntBASIC20.05■□□□□ 0.8
NDE1Q9NXR1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 AL117332.1-201ENST00000622628 974 ntBASIC20.05■□□□□ 0.8
NDE1Q9NXR1 AP004607.7-201ENST00000527152 1677 ntBASIC20.05■□□□□ 0.8
NDE1Q9NXR1 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
NDE1Q9NXR1 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 OR2I1P-207ENST00000453522 948 ntBASIC20.04■□□□□ 0.8
NDE1Q9NXR1 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 pRNA.6-201ENST00000610482 90 ntBASIC20.04■□□□□ 0.8
NDE1Q9NXR1 pRNA.5-201ENST00000612139 90 ntBASIC20.04■□□□□ 0.8
NDE1Q9NXR1 pRNA.11-201ENST00000618423 90 ntBASIC20.04■□□□□ 0.8
NDE1Q9NXR1 pRNA.13-201ENST00000619112 90 ntBASIC20.04■□□□□ 0.8
NDE1Q9NXR1 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
NDE1Q9NXR1 AC007225.1-201ENST00000566331 1836 ntBASIC20.04■□□□□ 0.8
NDE1Q9NXR1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
NDE1Q9NXR1 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
NDE1Q9NXR1 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.03■□□□□ 0.8
NDE1Q9NXR1 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.03■□□□□ 0.8
NDE1Q9NXR1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
NDE1Q9NXR1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
NDE1Q9NXR1 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms