Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS35Q96QK1 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS35Q96QK1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS35Q96QK1 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.65■□□□□ 0.9
VPS35Q96QK1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS35Q96QK1 CDCA4P2-201ENST00000441182 718 ntBASIC20.65■□□□□ 0.9
VPS35Q96QK1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS35Q96QK1 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
VPS35Q96QK1 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS35Q96QK1 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS35Q96QK1 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS35Q96QK1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.64■□□□□ 0.9
VPS35Q96QK1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
VPS35Q96QK1 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS35Q96QK1 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
VPS35Q96QK1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS35Q96QK1 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS35Q96QK1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS35Q96QK1 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS35Q96QK1 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS35Q96QK1 CNN2P6-201ENST00000439038 900 ntBASIC20.64■□□□□ 0.89
VPS35Q96QK1 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.64■□□□□ 0.89
VPS35Q96QK1 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS35Q96QK1 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS35Q96QK1 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
VPS35Q96QK1 RAP2CP1-201ENST00000605103 478 ntBASIC20.64■□□□□ 0.89
VPS35Q96QK1 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS35Q96QK1 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
VPS35Q96QK1 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS35Q96QK1 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS35Q96QK1 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS35Q96QK1 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VPS35Q96QK1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS35Q96QK1 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS35Q96QK1 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.63■□□□□ 0.89
VPS35Q96QK1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS35Q96QK1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS35Q96QK1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS35Q96QK1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS35Q96QK1 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS35Q96QK1 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS35Q96QK1 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS35Q96QK1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS35Q96QK1 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
VPS35Q96QK1 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS35Q96QK1 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS35Q96QK1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.62■□□□□ 0.89
VPS35Q96QK1 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS35Q96QK1 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS35Q96QK1 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS35Q96QK1 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS35Q96QK1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS35Q96QK1 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
VPS35Q96QK1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
VPS35Q96QK1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS35Q96QK1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS35Q96QK1 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS35Q96QK1 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS35Q96QK1 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 AC026185.1-201ENST00000445748 174 ntBASIC20.61■□□□□ 0.89
VPS35Q96QK1 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS35Q96QK1 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS35Q96QK1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS35Q96QK1 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
VPS35Q96QK1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS35Q96QK1 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS35Q96QK1 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS35Q96QK1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS35Q96QK1 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 AC091799.1-201ENST00000422823 811 ntBASIC20.6■□□□□ 0.89
VPS35Q96QK1 AC007322.1-201ENST00000426983 750 ntBASIC20.6■□□□□ 0.89
VPS35Q96QK1 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 AL162412.1-201ENST00000567129 965 ntBASIC20.6■□□□□ 0.89
VPS35Q96QK1 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
VPS35Q96QK1 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
VPS35Q96QK1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS35Q96QK1 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS35Q96QK1 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
VPS35Q96QK1 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
VPS35Q96QK1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
VPS35Q96QK1 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS35Q96QK1 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms