Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.61■□□□□ 0.73
PTCHD1Q96NR3 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 RAP2CP1-201ENST00000605103 478 ntBASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 AC013268.1-206ENST00000638368 961 ntBASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 AC112229.1-201ENST00000639295 961 ntBASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTCHD1Q96NR3 RBM17P2-201ENST00000616397 1405 ntBASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 AC245052.3-201ENST00000450182 901 ntBASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 AC026310.3-201ENST00000625186 2373 ntBASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 Z98882.1-201ENST00000622160 2253 ntBASIC19.59■□□□□ 0.73
PTCHD1Q96NR3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD1Q96NR3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD1Q96NR3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD1Q96NR3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD1Q96NR3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
PTCHD1Q96NR3 CNN2P6-201ENST00000439038 900 ntBASIC19.58■□□□□ 0.72
PTCHD1Q96NR3 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PTCHD1Q96NR3 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.58■□□□□ 0.72
PTCHD1Q96NR3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.58■□□□□ 0.72
PTCHD1Q96NR3 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTCHD1Q96NR3 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
PTCHD1Q96NR3 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PTCHD1Q96NR3 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD1Q96NR3 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 AC243732.1-201ENST00000612648 864 ntBASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD1Q96NR3 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD1Q96NR3 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD1Q96NR3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.55■□□□□ 0.72
PTCHD1Q96NR3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms