Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.27■■□□□ 1
SKA1Q96BD8 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.27■■□□□ 1
SKA1Q96BD8 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.27■■□□□ 1
SKA1Q96BD8 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.27■■□□□ 1
SKA1Q96BD8 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
SKA1Q96BD8 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SKA1Q96BD8 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.27■□□□□ 0.99
SKA1Q96BD8 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
SKA1Q96BD8 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SKA1Q96BD8 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.26■□□□□ 0.99
SKA1Q96BD8 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
SKA1Q96BD8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SKA1Q96BD8 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.26■□□□□ 0.99
SKA1Q96BD8 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SKA1Q96BD8 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.26■□□□□ 0.99
SKA1Q96BD8 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.26■□□□□ 0.99
SKA1Q96BD8 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SKA1Q96BD8 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SKA1Q96BD8 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SKA1Q96BD8 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SKA1Q96BD8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.26■□□□□ 0.99
SKA1Q96BD8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.26■□□□□ 0.99
SKA1Q96BD8 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SKA1Q96BD8 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SKA1Q96BD8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SKA1Q96BD8 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SKA1Q96BD8 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SKA1Q96BD8 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SKA1Q96BD8 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SKA1Q96BD8 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SKA1Q96BD8 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SKA1Q96BD8 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 KRT18P20-201ENST00000548986 1279 ntBASIC21.25■□□□□ 0.99
SKA1Q96BD8 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 UBE2DNL-204ENST00000602536 740 ntBASIC21.25■□□□□ 0.99
SKA1Q96BD8 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 MYCNOS-205ENST00000641950 531 ntBASIC21.25■□□□□ 0.99
SKA1Q96BD8 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SKA1Q96BD8 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SKA1Q96BD8 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.25■□□□□ 0.99
SKA1Q96BD8 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SKA1Q96BD8 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SKA1Q96BD8 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SKA1Q96BD8 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SKA1Q96BD8 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.24■□□□□ 0.99
SKA1Q96BD8 AC005181.1-201ENST00000604782 1256 ntBASIC21.24■□□□□ 0.99
SKA1Q96BD8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SKA1Q96BD8 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SKA1Q96BD8 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SKA1Q96BD8 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.24■□□□□ 0.99
SKA1Q96BD8 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
SKA1Q96BD8 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SKA1Q96BD8 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SKA1Q96BD8 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SKA1Q96BD8 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SKA1Q96BD8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SKA1Q96BD8 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
SKA1Q96BD8 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SKA1Q96BD8 AC055733.4-201ENST00000638462 1354 ntBASIC21.23■□□□□ 0.99
SKA1Q96BD8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 AP004607.7-201ENST00000527152 1677 ntBASIC21.22■□□□□ 0.99
SKA1Q96BD8 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 SLC29A4P1-201ENST00000398760 971 ntBASIC21.22■□□□□ 0.99
SKA1Q96BD8 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SKA1Q96BD8 AC083906.2-201ENST00000511578 360 ntBASIC21.22■□□□□ 0.99
SKA1Q96BD8 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.22■□□□□ 0.99
SKA1Q96BD8 DUX4L16-201ENST00000555130 1264 ntBASIC21.22■□□□□ 0.99
SKA1Q96BD8 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SKA1Q96BD8 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SKA1Q96BD8 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SKA1Q96BD8 OR7E47P-201ENST00000546390 1422 ntBASIC21.21■□□□□ 0.99
SKA1Q96BD8 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SKA1Q96BD8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.21■□□□□ 0.99
SKA1Q96BD8 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms