Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
NKX2-3Q8TAU0 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC24.73■■□□□ 1.55
NKX2-3Q8TAU0 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
NKX2-3Q8TAU0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
NKX2-3Q8TAU0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 KRT18P20-201ENST00000548986 1279 ntBASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 PLLP-204ENST00000569059 665 ntTSL 3 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 FGF8-207ENST00000618991 856 ntTSL 3 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 FEM1AP4-201ENST00000443167 1987 ntBASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC24.72■■□□□ 1.55
NKX2-3Q8TAU0 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 AL137060.1-201ENST00000618151 2648 ntBASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
NKX2-3Q8TAU0 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC24.7■■□□□ 1.55
NKX2-3Q8TAU0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
NKX2-3Q8TAU0 AC005229.4-201ENST00000610085 2198 ntBASIC24.7■■□□□ 1.55
NKX2-3Q8TAU0 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 PRORSD1P-201ENST00000295112 541 ntBASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NKX2-3Q8TAU0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 AC133552.2-202ENST00000575694 574 ntBASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
NKX2-3Q8TAU0 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 POU5F1P4-201ENST00000413175 1085 ntBASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 RHEB-204ENST00000472642 900 ntTSL 3 BASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 AC008175.2-201ENST00000612840 297 ntBASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 AC010536.3-201ENST00000620306 533 ntBASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 RBM17P2-201ENST00000616397 1405 ntBASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC24.68■■□□□ 1.54
NKX2-3Q8TAU0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NKX2-3Q8TAU0 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
NKX2-3Q8TAU0 SLC7A5P1-201ENST00000568957 537 ntBASIC24.67■■□□□ 1.54
NKX2-3Q8TAU0 AC105036.2-201ENST00000569468 176 ntBASIC24.67■■□□□ 1.54
NKX2-3Q8TAU0 MIR4758-201ENST00000577688 71 ntBASIC24.67■■□□□ 1.54
NKX2-3Q8TAU0 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NKX2-3Q8TAU0 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC24.67■■□□□ 1.54
NKX2-3Q8TAU0 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
NKX2-3Q8TAU0 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms