Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 SAPCD2P4-201ENST00000424595 1171 ntBASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 DUX4L26-201ENST00000489078 1255 ntBASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 GRAP-204ENST00000573099 846 ntTSL 3 BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SMC1BQ8NDV3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 AC120498.8-201ENST00000614275 531 ntBASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
SMC1BQ8NDV3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 TERF1P1-201ENST00000311003 1181 ntBASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 AL137013.1-201ENST00000432946 1228 ntBASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
SMC1BQ8NDV3 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 RBM42-202ENST00000586618 771 ntTSL 3 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 Six3os1_6.1-201ENST00000620790 196 ntBASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
SMC1BQ8NDV3 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
SMC1BQ8NDV3 LINC00526-201ENST00000581067 1875 ntBASIC24.83■■□□□ 1.56
SMC1BQ8NDV3 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC24.83■■□□□ 1.56
SMC1BQ8NDV3 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 LINC01568-207ENST00000641790 1380 ntBASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 KRT126P-201ENST00000549467 1181 ntBASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 H19-210ENST00000439725 1929 ntTSL 2 BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
SMC1BQ8NDV3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 LINC01960-201ENST00000563759 1884 ntBASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC24.81■■□□□ 1.56
SMC1BQ8NDV3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC24.81■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms