Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 AC010331.1-201ENST00000611423 582 ntBASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
SLC44A3Q8N4M1 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 C11orf96-202ENST00000528572 1834 ntBASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SLC44A3Q8N4M1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 AC007322.3-201ENST00000426526 701 ntBASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 BX088651.1-201ENST00000540551 451 ntBASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SLC44A3Q8N4M1 AC092053.2-201ENST00000640557 1818 ntBASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 RPS2P55-201ENST00000397318 883 ntBASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 AC012618.2-201ENST00000428058 849 ntBASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 AC107956.1-201ENST00000494359 873 ntBASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 KRT18P21-201ENST00000515767 1272 ntBASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 AC233702.5-201ENST00000584107 538 ntBASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SLC44A3Q8N4M1 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SLC44A3Q8N4M1 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 KRT17P2-201ENST00000300992 1314 ntBASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.34■■□□□ 1.01
SLC44A3Q8N4M1 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms