Protein–RNA interactions for Protein: Q8IVE0

CROCCP3, Putative ciliary rootlet coiled-coil protein-like 2 protein, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CROCCP3Q8IVE0 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 KRT18P24-201ENST00000344739 1156 ntBASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 MIR4281-201ENST00000580852 62 ntBASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 AC104564.3-201ENST00000582367 638 ntBASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CROCCP3Q8IVE0 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 RPS2-202ENST00000526522 924 ntTSL 2 BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CROCCP3Q8IVE0 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 LTB4R2-202ENST00000528054 3092 ntBASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 AC138932.1-201ENST00000534164 6830 ntBASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 RNF126P1-201ENST00000567452 1320 ntBASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 THA1P-201ENST00000590384 1145 ntBASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CROCCP3Q8IVE0 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 AC006128.1-201ENST00000624704 1661 ntBASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CROCCP3Q8IVE0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CROCCP3Q8IVE0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CROCCP3Q8IVE0 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CROCCP3Q8IVE0 HYI-213ENST00000583037 1322 ntTSL 5 BASIC18.77■□□□□ 0.6
CROCCP3Q8IVE0 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CROCCP3Q8IVE0 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.77■□□□□ 0.6
CROCCP3Q8IVE0 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CROCCP3Q8IVE0 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms