Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
LINC00643Q86TS7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 HTR7P1-202ENST00000624664 4411 ntBASIC13.04□□□□□ -0.32
LINC00643Q86TS7 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 AC112907.3-201ENST00000577781 2400 ntBASIC13.04□□□□□ -0.32
LINC00643Q86TS7 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
LINC00643Q86TS7 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 AL049796.1-201ENST00000565336 1766 ntBASIC13.03□□□□□ -0.32
LINC00643Q86TS7 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 KLF16-203ENST00000592313 508 ntTSL 3 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 AL353803.4-201ENST00000565882 1934 ntBASIC13.03□□□□□ -0.32
LINC00643Q86TS7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC13.03□□□□□ -0.32
LINC00643Q86TS7 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
LINC00643Q86TS7 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 AL133373.2-201ENST00000623187 2828 ntBASIC13.02□□□□□ -0.33
LINC00643Q86TS7 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms