Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 AC099791.1-201ENST00000416440 715 ntBASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 AC126544.1-201ENST00000580842 1059 ntBASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 AC027682.1-201ENST00000562846 899 ntBASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.84■□□□□ 0.77
PPP4R4Q6NUP7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
PPP4R4Q6NUP7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PPP4R4Q6NUP7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 SLC47A1P1-202ENST00000449666 945 ntBASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 AL499627.2-201ENST00000606283 725 ntBASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 AL031432.3-201ENST00000607698 485 ntBASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PPP4R4Q6NUP7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 MIR939-201ENST00000401314 82 ntBASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 AC105265.2-201ENST00000467189 838 ntBASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 AC091305.1-201ENST00000479476 895 ntBASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 AC233992.3-201ENST00000607491 485 ntBASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
PPP4R4Q6NUP7 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 AC073314.1-201ENST00000568729 2216 ntBASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 AFG3L1P-217ENST00000557444 2447 ntBASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 SUDS3P1-201ENST00000505831 966 ntBASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PPP4R4Q6NUP7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms