Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PDLIM4P50479 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM4P50479 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
PDLIM4P50479 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM4P50479 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.63■□□□□ 0.41
PDLIM4P50479 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 AC092053.2-201ENST00000640557 1818 ntBASIC17.63■□□□□ 0.41
PDLIM4P50479 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.63■□□□□ 0.41
PDLIM4P50479 AC061975.6-201ENST00000579045 1553 ntBASIC17.63■□□□□ 0.41
PDLIM4P50479 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC17.63■□□□□ 0.41
PDLIM4P50479 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.63■□□□□ 0.41
PDLIM4P50479 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.63■□□□□ 0.41
PDLIM4P50479 MIR4651-201ENST00000582622 73 ntBASIC17.63■□□□□ 0.41
PDLIM4P50479 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PDLIM4P50479 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
PDLIM4P50479 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM4P50479 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.62■□□□□ 0.41
PDLIM4P50479 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.62■□□□□ 0.41
PDLIM4P50479 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
PDLIM4P50479 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.62■□□□□ 0.41
PDLIM4P50479 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.62■□□□□ 0.41
PDLIM4P50479 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.62■□□□□ 0.41
PDLIM4P50479 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM4P50479 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
PDLIM4P50479 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM4P50479 AC003102.1-202ENST00000563394 1796 ntBASIC17.61■□□□□ 0.41
PDLIM4P50479 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.61■□□□□ 0.41
PDLIM4P50479 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM4P50479 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.61■□□□□ 0.41
PDLIM4P50479 AC097658.1-201ENST00000475555 843 ntBASIC17.61■□□□□ 0.41
PDLIM4P50479 RARRES2P4-201ENST00000514074 484 ntBASIC17.61■□□□□ 0.41
PDLIM4P50479 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.61■□□□□ 0.41
PDLIM4P50479 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM4P50479 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM4P50479 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM4P50479 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC17.61■□□□□ 0.41
PDLIM4P50479 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
PDLIM4P50479 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.61■□□□□ 0.41
PDLIM4P50479 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
PDLIM4P50479 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM4P50479 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM4P50479 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
PDLIM4P50479 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 AL137060.1-201ENST00000618151 2648 ntBASIC17.6■□□□□ 0.41
PDLIM4P50479 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.6■□□□□ 0.41
PDLIM4P50479 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM4P50479 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM4P50479 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM4P50479 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
PDLIM4P50479 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.6■□□□□ 0.41
PDLIM4P50479 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM4P50479 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM4P50479 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PDLIM4P50479 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PDLIM4P50479 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM4P50479 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM4P50479 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.59■□□□□ 0.41
PDLIM4P50479 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM4P50479 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PDLIM4P50479 POU5F1P3-201ENST00000428824 1078 ntBASIC17.59■□□□□ 0.41
PDLIM4P50479 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PDLIM4P50479 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM4P50479 AC245052.3-201ENST00000450182 901 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms