Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX2-1P43699 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC16.98■□□□□ 0.31
NKX2-1P43699 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
NKX2-1P43699 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
NKX2-1P43699 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
NKX2-1P43699 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX2-1P43699 OR2I1P-207ENST00000453522 948 ntBASIC16.98■□□□□ 0.31
NKX2-1P43699 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC16.98■□□□□ 0.31
NKX2-1P43699 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX2-1P43699 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
NKX2-1P43699 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
NKX2-1P43699 AC007225.1-201ENST00000566331 1836 ntBASIC16.98■□□□□ 0.31
NKX2-1P43699 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
NKX2-1P43699 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
NKX2-1P43699 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
NKX2-1P43699 AC006455.2-201ENST00000429931 906 ntBASIC16.97■□□□□ 0.31
NKX2-1P43699 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC16.97■□□□□ 0.31
NKX2-1P43699 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.97■□□□□ 0.31
NKX2-1P43699 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
NKX2-1P43699 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
NKX2-1P43699 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
NKX2-1P43699 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
NKX2-1P43699 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
NKX2-1P43699 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
NKX2-1P43699 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
NKX2-1P43699 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 NARF-205ENST00000412079 1760 ntTSL 5 BASIC16.96■□□□□ 0.31
NKX2-1P43699 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
NKX2-1P43699 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NKX2-1P43699 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.96■□□□□ 0.31
NKX2-1P43699 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.96■□□□□ 0.31
NKX2-1P43699 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC16.96■□□□□ 0.3
NKX2-1P43699 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.96■□□□□ 0.3
NKX2-1P43699 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.96■□□□□ 0.3
NKX2-1P43699 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NKX2-1P43699 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
NKX2-1P43699 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NKX2-1P43699 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
NKX2-1P43699 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.95■□□□□ 0.3
NKX2-1P43699 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC16.95■□□□□ 0.3
NKX2-1P43699 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.95■□□□□ 0.3
NKX2-1P43699 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.95■□□□□ 0.3
NKX2-1P43699 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC16.95■□□□□ 0.3
NKX2-1P43699 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC16.95■□□□□ 0.3
NKX2-1P43699 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.95■□□□□ 0.3
NKX2-1P43699 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX2-1P43699 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.94■□□□□ 0.3
NKX2-1P43699 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
NKX2-1P43699 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.94■□□□□ 0.3
NKX2-1P43699 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
NKX2-1P43699 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
NKX2-1P43699 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX2-1P43699 LSM4-201ENST00000252816 986 ntTSL 2 BASIC16.94■□□□□ 0.3
NKX2-1P43699 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC16.94■□□□□ 0.3
NKX2-1P43699 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
NKX2-1P43699 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC16.94■□□□□ 0.3
NKX2-1P43699 MIR4787-201ENST00000607364 84 ntBASIC16.94■□□□□ 0.3
NKX2-1P43699 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX2-1P43699 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.94■□□□□ 0.3
NKX2-1P43699 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.94■□□□□ 0.3
NKX2-1P43699 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX2-1P43699 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
NKX2-1P43699 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NKX2-1P43699 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC16.94■□□□□ 0.3
NKX2-1P43699 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX2-1P43699 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX2-1P43699 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.94■□□□□ 0.3
NKX2-1P43699 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX2-1P43699 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms