Protein–RNA interactions for Protein: P35914

HMGCL, Hydroxymethylglutaryl-CoA lyase, mitochondrial, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLP35914 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCLP35914 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCLP35914 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCLP35914 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGCLP35914 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HMGCLP35914 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGCLP35914 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCLP35914 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.74■□□□□ 0.91
HMGCLP35914 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.74■□□□□ 0.91
HMGCLP35914 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCLP35914 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCLP35914 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.74■□□□□ 0.91
HMGCLP35914 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGCLP35914 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCLP35914 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGCLP35914 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGCLP35914 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGCLP35914 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCLP35914 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HMGCLP35914 DUX4L16-201ENST00000555130 1264 ntBASIC20.74■□□□□ 0.91
HMGCLP35914 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.74■□□□□ 0.91
HMGCLP35914 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
HMGCLP35914 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCLP35914 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HMGCLP35914 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGCLP35914 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGCLP35914 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HMGCLP35914 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGCLP35914 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCLP35914 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCLP35914 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
HMGCLP35914 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGCLP35914 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGCLP35914 AC091799.1-201ENST00000422823 811 ntBASIC20.73■□□□□ 0.91
HMGCLP35914 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.73■□□□□ 0.91
HMGCLP35914 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.73■□□□□ 0.91
HMGCLP35914 AC013268.1-206ENST00000638368 961 ntBASIC20.73■□□□□ 0.91
HMGCLP35914 AC112229.1-201ENST00000639295 961 ntBASIC20.73■□□□□ 0.91
HMGCLP35914 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGCLP35914 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGCLP35914 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
HMGCLP35914 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCLP35914 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGCLP35914 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
HMGCLP35914 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCLP35914 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGCLP35914 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGCLP35914 AC007322.4-201ENST00000509611 723 ntBASIC20.72■□□□□ 0.91
HMGCLP35914 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCLP35914 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCLP35914 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCLP35914 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCLP35914 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCLP35914 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGCLP35914 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.72■□□□□ 0.91
HMGCLP35914 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGCLP35914 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
HMGCLP35914 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.71■□□□□ 0.91
HMGCLP35914 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGCLP35914 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
HMGCLP35914 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCLP35914 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCLP35914 AC004911.1-201ENST00000416316 871 ntBASIC20.71■□□□□ 0.91
HMGCLP35914 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.71■□□□□ 0.91
HMGCLP35914 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCLP35914 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.71■□□□□ 0.91
HMGCLP35914 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGCLP35914 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGCLP35914 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
HMGCLP35914 AC092666.2-201ENST00000613287 246 ntBASIC20.71■□□□□ 0.91
HMGCLP35914 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCLP35914 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCLP35914 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGCLP35914 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.71■□□□□ 0.91
HMGCLP35914 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
HMGCLP35914 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCLP35914 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCLP35914 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCLP35914 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCLP35914 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
HMGCLP35914 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGCLP35914 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGCLP35914 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
HMGCLP35914 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.7■□□□□ 0.9
HMGCLP35914 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
HMGCLP35914 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 AC116050.2-201ENST00000612102 1779 ntBASIC20.69■□□□□ 0.9
HMGCLP35914 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 AC011484.1-201ENST00000377652 1995 ntBASIC20.69■□□□□ 0.9
HMGCLP35914 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 CNN2P6-201ENST00000439038 900 ntBASIC20.69■□□□□ 0.9
HMGCLP35914 AC231657.2-201ENST00000624556 255 ntBASIC20.69■□□□□ 0.9
HMGCLP35914 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGCLP35914 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms