Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A1P20908 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.13■□□□□ 0.81
COL5A1P20908 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A1P20908 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A1P20908 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.13■□□□□ 0.81
COL5A1P20908 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.13■□□□□ 0.81
COL5A1P20908 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A1P20908 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.13■□□□□ 0.81
COL5A1P20908 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.13■□□□□ 0.81
COL5A1P20908 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.12■□□□□ 0.81
COL5A1P20908 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A1P20908 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A1P20908 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.12■□□□□ 0.81
COL5A1P20908 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A1P20908 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A1P20908 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A1P20908 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
COL5A1P20908 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A1P20908 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.12■□□□□ 0.81
COL5A1P20908 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.12■□□□□ 0.81
COL5A1P20908 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A1P20908 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.12■□□□□ 0.81
COL5A1P20908 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A1P20908 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.12■□□□□ 0.81
COL5A1P20908 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A1P20908 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A1P20908 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.11■□□□□ 0.81
COL5A1P20908 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A1P20908 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A1P20908 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A1P20908 SOX15-203ENST00000570788 1093 ntBASIC20.11■□□□□ 0.81
COL5A1P20908 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.11■□□□□ 0.81
COL5A1P20908 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL5A1P20908 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
COL5A1P20908 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A1P20908 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.11■□□□□ 0.81
COL5A1P20908 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
COL5A1P20908 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A1P20908 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A1P20908 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.11■□□□□ 0.81
COL5A1P20908 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A1P20908 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL5A1P20908 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 C11orf96-202ENST00000528572 1834 ntBASIC20.1■□□□□ 0.81
COL5A1P20908 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.1■□□□□ 0.81
COL5A1P20908 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.1■□□□□ 0.81
COL5A1P20908 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.1■□□□□ 0.81
COL5A1P20908 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.1■□□□□ 0.81
COL5A1P20908 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.1■□□□□ 0.81
COL5A1P20908 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
COL5A1P20908 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL5A1P20908 AC233723.2-201ENST00000623798 2106 ntBASIC20.1■□□□□ 0.81
COL5A1P20908 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.09■□□□□ 0.81
COL5A1P20908 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
COL5A1P20908 AC080038.3-201ENST00000623346 1952 ntBASIC20.09■□□□□ 0.81
COL5A1P20908 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
COL5A1P20908 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
COL5A1P20908 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.09■□□□□ 0.81
COL5A1P20908 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.09■□□□□ 0.81
COL5A1P20908 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL5A1P20908 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.09■□□□□ 0.81
COL5A1P20908 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.09■□□□□ 0.81
COL5A1P20908 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.09■□□□□ 0.81
COL5A1P20908 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.09■□□□□ 0.81
COL5A1P20908 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.09■□□□□ 0.81
COL5A1P20908 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A1P20908 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
COL5A1P20908 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
COL5A1P20908 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.08■□□□□ 0.81
COL5A1P20908 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A1P20908 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A1P20908 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL5A1P20908 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.08■□□□□ 0.8
COL5A1P20908 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL5A1P20908 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL5A1P20908 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL5A1P20908 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms