Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCNAP12004 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.19■□□□□ 0.82
PCNAP12004 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.19■□□□□ 0.82
PCNAP12004 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCNAP12004 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCNAP12004 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PCNAP12004 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PCNAP12004 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PCNAP12004 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.19■□□□□ 0.82
PCNAP12004 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCNAP12004 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
PCNAP12004 KRT87P-202ENST00000534226 1464 ntBASIC20.18■□□□□ 0.82
PCNAP12004 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PCNAP12004 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.18■□□□□ 0.82
PCNAP12004 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCNAP12004 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
PCNAP12004 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCNAP12004 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.18■□□□□ 0.82
PCNAP12004 EEF1DP3-203ENST00000566025 782 ntBASIC20.18■□□□□ 0.82
PCNAP12004 AC053503.5-201ENST00000601508 636 ntBASIC20.18■□□□□ 0.82
PCNAP12004 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.18■□□□□ 0.82
PCNAP12004 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.18■□□□□ 0.82
PCNAP12004 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCNAP12004 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PCNAP12004 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
PCNAP12004 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
PCNAP12004 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCNAP12004 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCNAP12004 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCNAP12004 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCNAP12004 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.17■□□□□ 0.82
PCNAP12004 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCNAP12004 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCNAP12004 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCNAP12004 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.17■□□□□ 0.82
PCNAP12004 YBX1P1-201ENST00000445822 960 ntBASIC20.17■□□□□ 0.82
PCNAP12004 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.17■□□□□ 0.82
PCNAP12004 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCNAP12004 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
PCNAP12004 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCNAP12004 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.17■□□□□ 0.82
PCNAP12004 AL121603.2-201ENST00000557373 2117 ntBASIC20.17■□□□□ 0.82
PCNAP12004 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.17■□□□□ 0.82
PCNAP12004 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.16■□□□□ 0.82
PCNAP12004 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.16■□□□□ 0.82
PCNAP12004 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 AL049796.1-201ENST00000565336 1766 ntBASIC20.16■□□□□ 0.82
PCNAP12004 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.16■□□□□ 0.82
PCNAP12004 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PCNAP12004 AC123595.1-201ENST00000440769 1046 ntBASIC20.16■□□□□ 0.82
PCNAP12004 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.16■□□□□ 0.82
PCNAP12004 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCNAP12004 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.15■□□□□ 0.82
PCNAP12004 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.15■□□□□ 0.82
PCNAP12004 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.15■□□□□ 0.82
PCNAP12004 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCNAP12004 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCNAP12004 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCNAP12004 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PCNAP12004 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCNAP12004 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCNAP12004 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCNAP12004 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.15■□□□□ 0.82
PCNAP12004 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCNAP12004 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.15■□□□□ 0.82
PCNAP12004 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
PCNAP12004 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PCNAP12004 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.82
PCNAP12004 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.14■□□□□ 0.81
PCNAP12004 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
PCNAP12004 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.14■□□□□ 0.81
PCNAP12004 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCNAP12004 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCNAP12004 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCNAP12004 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PCNAP12004 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.14■□□□□ 0.81
PCNAP12004 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.14■□□□□ 0.81
PCNAP12004 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.14■□□□□ 0.81
PCNAP12004 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.14■□□□□ 0.81
PCNAP12004 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCNAP12004 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PCNAP12004 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCNAP12004 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCNAP12004 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PCNAP12004 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCNAP12004 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCNAP12004 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.13■□□□□ 0.81
PCNAP12004 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
PCNAP12004 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms