Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
COL4A1P02462 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL4A1P02462 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC25.68■■□□□ 1.7
COL4A1P02462 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC25.68■■□□□ 1.7
COL4A1P02462 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC25.68■■□□□ 1.7
COL4A1P02462 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC25.68■■□□□ 1.7
COL4A1P02462 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC25.68■■□□□ 1.7
COL4A1P02462 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
COL4A1P02462 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
COL4A1P02462 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
COL4A1P02462 PNMA6B-201ENST00000538162 1200 ntBASIC25.68■■□□□ 1.7
COL4A1P02462 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC25.68■■□□□ 1.7
COL4A1P02462 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
COL4A1P02462 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
COL4A1P02462 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL4A1P02462 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
COL4A1P02462 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC25.67■■□□□ 1.7
COL4A1P02462 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC25.67■■□□□ 1.7
COL4A1P02462 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL4A1P02462 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
COL4A1P02462 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
COL4A1P02462 MCRIP2P1-201ENST00000394346 511 ntBASIC25.67■■□□□ 1.7
COL4A1P02462 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
COL4A1P02462 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A1P02462 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A1P02462 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC25.66■■□□□ 1.7
COL4A1P02462 USP36-216ENST00000589424 970 ntTSL 5 BASIC25.66■■□□□ 1.7
COL4A1P02462 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A1P02462 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A1P02462 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A1P02462 GCK-205ENST00000437084 1385 ntTSL 5 BASIC25.66■■□□□ 1.7
COL4A1P02462 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC25.65■■□□□ 1.7
COL4A1P02462 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 SAPCD2P1-201ENST00000395413 1184 ntBASIC25.65■■□□□ 1.7
COL4A1P02462 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC25.65■■□□□ 1.7
COL4A1P02462 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC25.65■■□□□ 1.7
COL4A1P02462 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC25.65■■□□□ 1.7
COL4A1P02462 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC25.65■■□□□ 1.7
COL4A1P02462 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A1P02462 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC25.64■■□□□ 1.7
COL4A1P02462 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC25.64■■□□□ 1.7
COL4A1P02462 AL359736.2-201ENST00000621992 437 ntBASIC25.64■■□□□ 1.7
COL4A1P02462 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL4A1P02462 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
COL4A1P02462 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL4A1P02462 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
COL4A1P02462 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL4A1P02462 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
COL4A1P02462 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL4A1P02462 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC25.64■■□□□ 1.69
COL4A1P02462 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL4A1P02462 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC25.64■■□□□ 1.69
COL4A1P02462 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC25.64■■□□□ 1.69
COL4A1P02462 AC105020.6-201ENST00000621523 1217 ntBASIC25.64■■□□□ 1.69
COL4A1P02462 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC25.64■■□□□ 1.69
COL4A1P02462 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL4A1P02462 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC25.64■■□□□ 1.69
COL4A1P02462 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL4A1P02462 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A1P02462 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A1P02462 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A1P02462 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A1P02462 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A1P02462 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC25.63■■□□□ 1.69
COL4A1P02462 UNC93B4-201ENST00000505679 747 ntBASIC25.63■■□□□ 1.69
COL4A1P02462 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC25.63■■□□□ 1.69
COL4A1P02462 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC25.63■■□□□ 1.69
COL4A1P02462 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A1P02462 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC25.63■■□□□ 1.69
COL4A1P02462 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
COL4A1P02462 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A1P02462 PEX7-202ENST00000367756 680 ntTSL 3 BASIC25.62■■□□□ 1.69
COL4A1P02462 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A1P02462 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A1P02462 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A1P02462 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC25.62■■□□□ 1.69
COL4A1P02462 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC25.62■■□□□ 1.69
COL4A1P02462 CDV3P1-201ENST00000471403 739 ntBASIC25.62■■□□□ 1.69
COL4A1P02462 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC25.62■■□□□ 1.69
COL4A1P02462 IRX5-204ENST00000560154 879 ntTSL 5 BASIC25.62■■□□□ 1.69
COL4A1P02462 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC25.62■■□□□ 1.69
COL4A1P02462 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A1P02462 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC25.62■■□□□ 1.69
COL4A1P02462 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A1P02462 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC25.62■■□□□ 1.69
COL4A1P02462 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A1P02462 GUSBP5-202ENST00000510805 1989 ntBASIC25.62■■□□□ 1.69
COL4A1P02462 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A1P02462 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A1P02462 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A1P02462 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC25.61■■□□□ 1.69
COL4A1P02462 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms