Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC29.72■■■□□ 2.35
NPHP4O75161 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC29.72■■■□□ 2.35
NPHP4O75161 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
NPHP4O75161 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC29.71■■■□□ 2.35
NPHP4O75161 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
NPHP4O75161 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC29.71■■■□□ 2.35
NPHP4O75161 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
NPHP4O75161 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
NPHP4O75161 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC29.71■■■□□ 2.35
NPHP4O75161 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC29.71■■■□□ 2.35
NPHP4O75161 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
NPHP4O75161 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC29.71■■■□□ 2.35
NPHP4O75161 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
NPHP4O75161 WDR88-203ENST00000592765 651 ntTSL 5 BASIC29.71■■■□□ 2.35
NPHP4O75161 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC29.7■■■□□ 2.35
NPHP4O75161 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
NPHP4O75161 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.35
NPHP4O75161 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC29.7■■■□□ 2.35
NPHP4O75161 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC29.7■■■□□ 2.34
NPHP4O75161 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC29.7■■■□□ 2.34
NPHP4O75161 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC29.7■■■□□ 2.34
NPHP4O75161 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
NPHP4O75161 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC29.7■■■□□ 2.34
NPHP4O75161 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC29.7■■■□□ 2.34
NPHP4O75161 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
NPHP4O75161 AC026471.5-201ENST00000615068 467 ntBASIC29.7■■■□□ 2.34
NPHP4O75161 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC29.7■■■□□ 2.34
NPHP4O75161 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
NPHP4O75161 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP4O75161 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP4O75161 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP4O75161 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP4O75161 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP4O75161 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC29.69■■■□□ 2.34
NPHP4O75161 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC29.69■■■□□ 2.34
NPHP4O75161 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC29.69■■■□□ 2.34
NPHP4O75161 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC29.69■■■□□ 2.34
NPHP4O75161 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC29.69■■■□□ 2.34
NPHP4O75161 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP4O75161 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
NPHP4O75161 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP4O75161 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC29.68■■■□□ 2.34
NPHP4O75161 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP4O75161 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP4O75161 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP4O75161 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC29.68■■■□□ 2.34
NPHP4O75161 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC29.68■■■□□ 2.34
NPHP4O75161 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC29.68■■■□□ 2.34
NPHP4O75161 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC29.68■■■□□ 2.34
NPHP4O75161 P4HB-223ENST00000576390 439 ntTSL 4 BASIC29.68■■■□□ 2.34
NPHP4O75161 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
NPHP4O75161 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP4O75161 AC007322.3-201ENST00000426526 701 ntBASIC29.67■■■□□ 2.34
NPHP4O75161 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC29.67■■■□□ 2.34
NPHP4O75161 GRAP-204ENST00000573099 846 ntTSL 3 BASIC29.67■■■□□ 2.34
NPHP4O75161 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP4O75161 RMI2-205ENST00000576027 818 ntTSL 2 BASIC29.67■■■□□ 2.34
NPHP4O75161 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
NPHP4O75161 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP4O75161 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP4O75161 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP4O75161 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC29.67■■■□□ 2.34
NPHP4O75161 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP4O75161 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC29.67■■■□□ 2.34
NPHP4O75161 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP4O75161 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC29.66■■■□□ 2.34
NPHP4O75161 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC29.66■■■□□ 2.34
NPHP4O75161 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC29.66■■■□□ 2.34
NPHP4O75161 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC29.66■■■□□ 2.34
NPHP4O75161 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC29.66■■■□□ 2.34
NPHP4O75161 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC29.66■■■□□ 2.34
NPHP4O75161 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP4O75161 AC137767.1-201ENST00000602918 1920 ntBASIC29.66■■■□□ 2.34
NPHP4O75161 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC29.66■■■□□ 2.34
NPHP4O75161 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC29.66■■■□□ 2.34
NPHP4O75161 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP4O75161 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC29.65■■■□□ 2.34
NPHP4O75161 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP4O75161 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC29.65■■■□□ 2.34
NPHP4O75161 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC29.65■■■□□ 2.34
NPHP4O75161 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC29.65■■■□□ 2.34
NPHP4O75161 AP003071.4-201ENST00000562276 1284 ntBASIC29.65■■■□□ 2.34
NPHP4O75161 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC29.65■■■□□ 2.34
NPHP4O75161 CABP2-204ENST00000636477 941 ntTSL 5 BASIC29.65■■■□□ 2.34
NPHP4O75161 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
NPHP4O75161 MMP23A-201ENST00000234610 1017 ntBASIC29.64■■■□□ 2.34
NPHP4O75161 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC29.64■■■□□ 2.34
NPHP4O75161 AC120498.8-201ENST00000614275 531 ntBASIC29.64■■■□□ 2.34
NPHP4O75161 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
NPHP4O75161 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC29.64■■■□□ 2.34
NPHP4O75161 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC29.64■■■□□ 2.34
NPHP4O75161 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
NPHP4O75161 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC29.64■■■□□ 2.33
NPHP4O75161 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
NPHP4O75161 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
NPHP4O75161 GGT1-206ENST00000404223 952 ntTSL 2 BASIC29.63■■■□□ 2.33
NPHP4O75161 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
NPHP4O75161 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC29.63■■■□□ 2.33
NPHP4O75161 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC29.63■■■□□ 2.33
NPHP4O75161 AC145285.6-201ENST00000604632 637 ntBASIC29.63■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms