Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.37■□□□□ 0.85
TMX2-CTNND1H3BSU7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
TMX2-CTNND1H3BSU7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.37■□□□□ 0.85
TMX2-CTNND1H3BSU7 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.37■□□□□ 0.85
TMX2-CTNND1H3BSU7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TMX2-CTNND1H3BSU7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
TMX2-CTNND1H3BSU7 MKRN4P-201ENST00000444706 1521 ntBASIC20.37■□□□□ 0.85
TMX2-CTNND1H3BSU7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TMX2-CTNND1H3BSU7 C11orf96-202ENST00000528572 1834 ntBASIC20.37■□□□□ 0.85
TMX2-CTNND1H3BSU7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TMX2-CTNND1H3BSU7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 AC139530.1-201ENST00000575312 1977 ntBASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 CYP2T1P-201ENST00000432607 1285 ntBASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TMX2-CTNND1H3BSU7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.34■□□□□ 0.85
TMX2-CTNND1H3BSU7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TMX2-CTNND1H3BSU7 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TMX2-CTNND1H3BSU7 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TMX2-CTNND1H3BSU7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TMX2-CTNND1H3BSU7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
TMX2-CTNND1H3BSU7 MIPEPP3-201ENST00000412105 444 ntBASIC20.33■□□□□ 0.85
TMX2-CTNND1H3BSU7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TMX2-CTNND1H3BSU7 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.33■□□□□ 0.85
TMX2-CTNND1H3BSU7 AC066615.1-201ENST00000640911 628 ntBASIC20.33■□□□□ 0.85
TMX2-CTNND1H3BSU7 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
TMX2-CTNND1H3BSU7 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TMX2-CTNND1H3BSU7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TMX2-CTNND1H3BSU7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TMX2-CTNND1H3BSU7 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TMX2-CTNND1H3BSU7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.33■□□□□ 0.84
TMX2-CTNND1H3BSU7 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 AC092118.2-201ENST00000613495 667 ntBASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 AC005229.4-201ENST00000610085 2198 ntBASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
TMX2-CTNND1H3BSU7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms