Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC16.39■□□□□ 0.21
COL6A5A8TX70 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
COL6A5A8TX70 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 AC110285.5-201ENST00000611501 352 ntBASIC16.38■□□□□ 0.21
COL6A5A8TX70 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 AC010947.1-201ENST00000623454 693 ntBASIC16.38■□□□□ 0.21
COL6A5A8TX70 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 CYP2D8P-201ENST00000433633 1490 ntBASIC16.38■□□□□ 0.21
COL6A5A8TX70 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 AL137013.1-201ENST00000432946 1228 ntBASIC16.38■□□□□ 0.21
COL6A5A8TX70 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 AC008175.2-201ENST00000612840 297 ntBASIC16.38■□□□□ 0.21
COL6A5A8TX70 AC004263.2-201ENST00000617183 678 ntBASIC16.38■□□□□ 0.21
COL6A5A8TX70 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
COL6A5A8TX70 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC16.38■□□□□ 0.21
COL6A5A8TX70 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL6A5A8TX70 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 AC104076.2-201ENST00000448912 469 ntBASIC16.37■□□□□ 0.21
COL6A5A8TX70 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
COL6A5A8TX70 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL6A5A8TX70 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL6A5A8TX70 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 AC105020.6-201ENST00000621523 1217 ntBASIC16.37■□□□□ 0.21
COL6A5A8TX70 THRA-202ENST00000394121 2260 ntTSL 2 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL6A5A8TX70 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL6A5A8TX70 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL6A5A8TX70 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
COL6A5A8TX70 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
COL6A5A8TX70 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 H19-210ENST00000439725 1929 ntTSL 2 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 LINC01960-201ENST00000563759 1884 ntBASIC16.36■□□□□ 0.21
COL6A5A8TX70 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
COL6A5A8TX70 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
COL6A5A8TX70 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A5A8TX70 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A5A8TX70 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.35■□□□□ 0.21
COL6A5A8TX70 KRASP1-201ENST00000407852 552 ntBASIC16.35■□□□□ 0.21
COL6A5A8TX70 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A5A8TX70 NUDT16P1-203ENST00000513809 620 ntBASIC16.35■□□□□ 0.21
COL6A5A8TX70 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A5A8TX70 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A5A8TX70 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
COL6A5A8TX70 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
COL6A5A8TX70 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A5A8TX70 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.35■□□□□ 0.21
COL6A5A8TX70 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.35■□□□□ 0.21
COL6A5A8TX70 AC023511.2-201ENST00000618803 211 ntBASIC16.35■□□□□ 0.21
COL6A5A8TX70 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.35■□□□□ 0.21
COL6A5A8TX70 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC16.35■□□□□ 0.21
COL6A5A8TX70 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms