Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TCRBV7S3A2A0A539 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
TCRBV7S3A2A0A539 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
TCRBV7S3A2A0A539 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
TCRBV7S3A2A0A539 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TCRBV7S3A2A0A539 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TCRBV7S3A2A0A539 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.14■□□□□ 0.98
TCRBV7S3A2A0A539 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TCRBV7S3A2A0A539 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.14■□□□□ 0.98
TCRBV7S3A2A0A539 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.14■□□□□ 0.98
TCRBV7S3A2A0A539 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TCRBV7S3A2A0A539 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 AC142381.2-201ENST00000566120 298 ntBASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TCRBV7S3A2A0A539 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 FP700111.2-201ENST00000619190 1892 ntBASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 AP004607.4-201ENST00000530158 1459 ntBASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 PCDHAC2-203ENST00000615316 3011 ntBASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TCRBV7S3A2A0A539 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 AL358852.1-201ENST00000623174 1268 ntBASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.11■□□□□ 0.97
TCRBV7S3A2A0A539 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV7S3A2A0A539 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TCRBV7S3A2A0A539 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV7S3A2A0A539 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV7S3A2A0A539 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TCRBV7S3A2A0A539 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms