Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.8■■□□□ 1.08
PCDHA3Q9Y5H8 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
PCDHA3Q9Y5H8 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHA3Q9Y5H8 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHA3Q9Y5H8 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHA3Q9Y5H8 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHA3Q9Y5H8 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHA3Q9Y5H8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHA3Q9Y5H8 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHA3Q9Y5H8 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHA3Q9Y5H8 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHA3Q9Y5H8 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 AC007225.1-201ENST00000566331 1836 ntBASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHA3Q9Y5H8 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 SUDS3P1-201ENST00000505831 966 ntBASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
PCDHA3Q9Y5H8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 TPRG1LP1-201ENST00000598702 760 ntBASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 EXOC3-AS1-202ENST00000623673 1663 ntBASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDHA3Q9Y5H8 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 AC061975.6-201ENST00000579045 1553 ntBASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 AC027702.1-201ENST00000563810 1770 ntBASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 AL354811.1-201ENST00000610286 706 ntBASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHA3Q9Y5H8 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA3Q9Y5H8 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA3Q9Y5H8 AP004607.4-201ENST00000530158 1459 ntBASIC21.73■■□□□ 1.07
PCDHA3Q9Y5H8 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHA3Q9Y5H8 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.73■■□□□ 1.07
PCDHA3Q9Y5H8 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms