Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LRRC42Q9Y546 AC004687.1-201ENST00000579003 1625 ntBASIC19.65■□□□□ 0.74
LRRC42Q9Y546 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 DUX4L4-201ENST00000566884 1269 ntBASIC19.65■□□□□ 0.74
LRRC42Q9Y546 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LRRC42Q9Y546 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LRRC42Q9Y546 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LRRC42Q9Y546 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LRRC42Q9Y546 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
LRRC42Q9Y546 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LRRC42Q9Y546 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
LRRC42Q9Y546 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LRRC42Q9Y546 AC005332.8-201ENST00000622750 2735 ntBASIC19.64■□□□□ 0.73
LRRC42Q9Y546 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 AC007613.1-201ENST00000572811 2597 ntBASIC19.63■□□□□ 0.73
LRRC42Q9Y546 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 AC018755.3-202ENST00000596210 929 ntBASIC19.63■□□□□ 0.73
LRRC42Q9Y546 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.63■□□□□ 0.73
LRRC42Q9Y546 AC020916.1-201ENST00000587762 1774 ntBASIC19.62■□□□□ 0.73
LRRC42Q9Y546 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 GPX1-201ENST00000419349 1106 ntBASIC19.62■□□□□ 0.73
LRRC42Q9Y546 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 AC121338.2-201ENST00000622535 1744 ntBASIC19.62■□□□□ 0.73
LRRC42Q9Y546 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 AL049812.1-201ENST00000432563 2267 ntBASIC19.62■□□□□ 0.73
LRRC42Q9Y546 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.62■□□□□ 0.73
LRRC42Q9Y546 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.61■□□□□ 0.73
LRRC42Q9Y546 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms