Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.58■□□□□ 0.57
VSX1Q9NZR4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.58■□□□□ 0.57
VSX1Q9NZR4 AC006128.1-201ENST00000624704 1661 ntBASIC18.58■□□□□ 0.57
VSX1Q9NZR4 IRS3P-201ENST00000223076 1006 ntBASIC18.58■□□□□ 0.56
VSX1Q9NZR4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 MIR6084-201ENST00000622012 110 ntBASIC18.58■□□□□ 0.56
VSX1Q9NZR4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.58■□□□□ 0.56
VSX1Q9NZR4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 AC105265.2-201ENST00000467189 838 ntBASIC18.57■□□□□ 0.56
VSX1Q9NZR4 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 PLK5-205ENST00000642079 1969 ntBASIC18.57■□□□□ 0.56
VSX1Q9NZR4 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VSX1Q9NZR4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 AC027612.3-201ENST00000413684 1047 ntBASIC18.56■□□□□ 0.56
VSX1Q9NZR4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.56■□□□□ 0.56
VSX1Q9NZR4 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 AC121338.2-201ENST00000622535 1744 ntBASIC18.55■□□□□ 0.56
VSX1Q9NZR4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 AP004607.4-201ENST00000530158 1459 ntBASIC18.55■□□□□ 0.56
VSX1Q9NZR4 KRT87P-202ENST00000534226 1464 ntBASIC18.55■□□□□ 0.56
VSX1Q9NZR4 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 AC079140.4-201ENST00000507448 529 ntBASIC18.55■□□□□ 0.56
VSX1Q9NZR4 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 AC061975.6-201ENST00000579045 1553 ntBASIC18.55■□□□□ 0.56
VSX1Q9NZR4 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VSX1Q9NZR4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 MIR638-201ENST00000385237 100 ntBASIC18.54■□□□□ 0.56
VSX1Q9NZR4 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VSX1Q9NZR4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
VSX1Q9NZR4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms