Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 AC097658.1-201ENST00000475555 843 ntBASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 AC243732.1-201ENST00000612648 864 ntBASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 MYC-209ENST00000641252 345 ntBASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 AC093827.2-201ENST00000512654 315 ntBASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 RARRES2P4-201ENST00000514074 484 ntBASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 AC010980.2-201ENST00000587099 1412 ntBASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TM9SF3Q9HD45 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.83■□□□□ 0.93
TM9SF3Q9HD45 PRORSD1P-201ENST00000295112 541 ntBASIC20.83■□□□□ 0.93
TM9SF3Q9HD45 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TM9SF3Q9HD45 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.83■□□□□ 0.93
TM9SF3Q9HD45 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.83■□□□□ 0.93
TM9SF3Q9HD45 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.83■□□□□ 0.93
TM9SF3Q9HD45 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
TM9SF3Q9HD45 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.83■□□□□ 0.92
TM9SF3Q9HD45 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TM9SF3Q9HD45 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TM9SF3Q9HD45 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TM9SF3Q9HD45 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TM9SF3Q9HD45 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 AC091874.3-201ENST00000512672 1195 ntBASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 AC007375.3-201ENST00000600936 2314 ntBASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TM9SF3Q9HD45 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TM9SF3Q9HD45 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms