Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 UBE2SP1-201ENST00000450587 669 ntBASIC26.65■■□□□ 1.86
USP42Q9H9J4 NME6-213ENST00000451657 871 ntTSL 2 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 AC060766.5-201ENST00000590539 871 ntBASIC26.65■■□□□ 1.86
USP42Q9H9J4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
USP42Q9H9J4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC26.65■■□□□ 1.86
USP42Q9H9J4 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.86
USP42Q9H9J4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.85
USP42Q9H9J4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
USP42Q9H9J4 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.85
USP42Q9H9J4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC26.64■■□□□ 1.85
USP42Q9H9J4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
USP42Q9H9J4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC26.64■■□□□ 1.85
USP42Q9H9J4 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
USP42Q9H9J4 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.85
USP42Q9H9J4 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC26.64■■□□□ 1.85
USP42Q9H9J4 FAM21FP-204ENST00000608637 956 ntBASIC26.64■■□□□ 1.85
USP42Q9H9J4 HLA-B-256ENST00000639848 1089 ntBASIC26.64■■□□□ 1.85
USP42Q9H9J4 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
USP42Q9H9J4 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
USP42Q9H9J4 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC26.63■■□□□ 1.85
USP42Q9H9J4 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC26.63■■□□□ 1.85
USP42Q9H9J4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC26.63■■□□□ 1.85
USP42Q9H9J4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
USP42Q9H9J4 AC091799.1-201ENST00000422823 811 ntBASIC26.63■■□□□ 1.85
USP42Q9H9J4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC26.63■■□□□ 1.85
USP42Q9H9J4 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC26.63■■□□□ 1.85
USP42Q9H9J4 CYP2T3P-201ENST00000601990 817 ntBASIC26.63■■□□□ 1.85
USP42Q9H9J4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
USP42Q9H9J4 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
USP42Q9H9J4 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
USP42Q9H9J4 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC26.62■■□□□ 1.85
USP42Q9H9J4 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC26.62■■□□□ 1.85
USP42Q9H9J4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
USP42Q9H9J4 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
USP42Q9H9J4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC26.62■■□□□ 1.85
USP42Q9H9J4 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
USP42Q9H9J4 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
USP42Q9H9J4 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
USP42Q9H9J4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
USP42Q9H9J4 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC26.61■■□□□ 1.85
USP42Q9H9J4 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC26.61■■□□□ 1.85
USP42Q9H9J4 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
USP42Q9H9J4 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC26.61■■□□□ 1.85
USP42Q9H9J4 AC100791.3-201ENST00000617619 330 ntBASIC26.61■■□□□ 1.85
USP42Q9H9J4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC26.61■■□□□ 1.85
USP42Q9H9J4 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
USP42Q9H9J4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
USP42Q9H9J4 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
USP42Q9H9J4 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
USP42Q9H9J4 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC26.6■■□□□ 1.85
USP42Q9H9J4 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
USP42Q9H9J4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
USP42Q9H9J4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
USP42Q9H9J4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
USP42Q9H9J4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
USP42Q9H9J4 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC26.6■■□□□ 1.85
USP42Q9H9J4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC26.6■■□□□ 1.85
USP42Q9H9J4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
USP42Q9H9J4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC26.6■■□□□ 1.85
USP42Q9H9J4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
USP42Q9H9J4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
USP42Q9H9J4 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC26.59■■□□□ 1.85
USP42Q9H9J4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
USP42Q9H9J4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
USP42Q9H9J4 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC26.59■■□□□ 1.85
USP42Q9H9J4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC26.59■■□□□ 1.85
USP42Q9H9J4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC26.59■■□□□ 1.85
USP42Q9H9J4 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC26.59■■□□□ 1.85
USP42Q9H9J4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC26.59■■□□□ 1.85
USP42Q9H9J4 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
USP42Q9H9J4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP42Q9H9J4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC26.58■■□□□ 1.85
USP42Q9H9J4 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP42Q9H9J4 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
USP42Q9H9J4 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC26.58■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms