Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 MIR572-201ENST00000384983 95 ntBASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 SUDS3P1-201ENST00000505831 966 ntBASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 AC009237.3-201ENST00000393279 1427 ntBASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 LINC01006-201ENST00000333319 2292 ntBASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM56Q9BRZ2 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 BX005040.4-201ENST00000637145 1518 ntBASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 PLK5-205ENST00000642079 1969 ntBASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 AC092667.1-201ENST00000434301 2586 ntBASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 AC091305.1-201ENST00000479476 895 ntBASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TRIM56Q9BRZ2 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
TRIM56Q9BRZ2 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM56Q9BRZ2 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM56Q9BRZ2 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM56Q9BRZ2 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM56Q9BRZ2 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM56Q9BRZ2 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.16■□□□□ 0.98
TRIM56Q9BRZ2 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM56Q9BRZ2 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TRIM56Q9BRZ2 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
TRIM56Q9BRZ2 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM56Q9BRZ2 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.14■□□□□ 0.98
TRIM56Q9BRZ2 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM56Q9BRZ2 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.14■□□□□ 0.98
TRIM56Q9BRZ2 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms