Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 AC003102.1-202ENST00000563394 1796 ntBASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CLIP3Q96DZ5 AC242852.2-201ENST00000615738 1807 ntBASIC20.02■□□□□ 0.79
CLIP3Q96DZ5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
CLIP3Q96DZ5 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 SLC29A4P1-201ENST00000398760 971 ntBASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CLIP3Q96DZ5 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLIP3Q96DZ5 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20■□□□□ 0.79
CLIP3Q96DZ5 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CLIP3Q96DZ5 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CLIP3Q96DZ5 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLIP3Q96DZ5 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CLIP3Q96DZ5 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
CLIP3Q96DZ5 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20■□□□□ 0.79
CLIP3Q96DZ5 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CLIP3Q96DZ5 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 AL117328.2-201ENST00000624617 1940 ntBASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 TSPY6P-201ENST00000448518 926 ntBASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 AF201337.1-201ENST00000520239 748 ntBASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CLIP3Q96DZ5 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CLIP3Q96DZ5 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms