Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TTC28Q96AY4 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.54■■□□□ 1.04
TTC28Q96AY4 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TTC28Q96AY4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
TTC28Q96AY4 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.54■■□□□ 1.04
TTC28Q96AY4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.54■■□□□ 1.04
TTC28Q96AY4 AC053503.5-201ENST00000601508 636 ntBASIC21.54■■□□□ 1.04
TTC28Q96AY4 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
TTC28Q96AY4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TTC28Q96AY4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.54■■□□□ 1.04
TTC28Q96AY4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
TTC28Q96AY4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.54■■□□□ 1.04
TTC28Q96AY4 CLEC4GP1-201ENST00000596555 870 ntBASIC21.54■■□□□ 1.04
TTC28Q96AY4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.54■■□□□ 1.04
TTC28Q96AY4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
TTC28Q96AY4 AC079598.2-202ENST00000546624 1451 ntBASIC21.53■■□□□ 1.04
TTC28Q96AY4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TTC28Q96AY4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.53■■□□□ 1.04
TTC28Q96AY4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.53■■□□□ 1.04
TTC28Q96AY4 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
TTC28Q96AY4 MYC-208ENST00000641036 567 ntBASIC21.53■■□□□ 1.04
TTC28Q96AY4 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TTC28Q96AY4 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.53■■□□□ 1.04
TTC28Q96AY4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TTC28Q96AY4 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.53■■□□□ 1.04
TTC28Q96AY4 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TTC28Q96AY4 KRASP1-201ENST00000407852 552 ntBASIC21.53■■□□□ 1.04
TTC28Q96AY4 AF186192.3-201ENST00000583427 947 ntBASIC21.53■■□□□ 1.04
TTC28Q96AY4 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.53■■□□□ 1.04
TTC28Q96AY4 AP004607.7-201ENST00000527152 1677 ntBASIC21.53■■□□□ 1.04
TTC28Q96AY4 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TTC28Q96AY4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TTC28Q96AY4 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.52■■□□□ 1.04
TTC28Q96AY4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
TTC28Q96AY4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TTC28Q96AY4 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TTC28Q96AY4 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TTC28Q96AY4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TTC28Q96AY4 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.52■■□□□ 1.04
TTC28Q96AY4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.52■■□□□ 1.04
TTC28Q96AY4 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.52■■□□□ 1.04
TTC28Q96AY4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TTC28Q96AY4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TTC28Q96AY4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TTC28Q96AY4 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.52■■□□□ 1.04
TTC28Q96AY4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TTC28Q96AY4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.52■■□□□ 1.04
TTC28Q96AY4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.52■■□□□ 1.04
TTC28Q96AY4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
TTC28Q96AY4 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.52■■□□□ 1.03
TTC28Q96AY4 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
TTC28Q96AY4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.51■■□□□ 1.03
TTC28Q96AY4 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
TTC28Q96AY4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TTC28Q96AY4 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TTC28Q96AY4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TTC28Q96AY4 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TTC28Q96AY4 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.51■■□□□ 1.03
TTC28Q96AY4 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
TTC28Q96AY4 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.51■■□□□ 1.03
TTC28Q96AY4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TTC28Q96AY4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TTC28Q96AY4 AP000525.1-201ENST00000608286 694 ntBASIC21.51■■□□□ 1.03
TTC28Q96AY4 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.51■■□□□ 1.03
TTC28Q96AY4 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TTC28Q96AY4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
TTC28Q96AY4 MCRIP2P1-201ENST00000394346 511 ntBASIC21.5■■□□□ 1.03
TTC28Q96AY4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.5■■□□□ 1.03
TTC28Q96AY4 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.5■■□□□ 1.03
TTC28Q96AY4 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
TTC28Q96AY4 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TTC28Q96AY4 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TTC28Q96AY4 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
TTC28Q96AY4 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
TTC28Q96AY4 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TTC28Q96AY4 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
TTC28Q96AY4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.5■■□□□ 1.03
TTC28Q96AY4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.5■■□□□ 1.03
TTC28Q96AY4 AC006011.2-201ENST00000621313 1158 ntBASIC21.5■■□□□ 1.03
TTC28Q96AY4 AP000550.4-202ENST00000639755 178 ntBASIC21.5■■□□□ 1.03
TTC28Q96AY4 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.49■■□□□ 1.03
TTC28Q96AY4 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TTC28Q96AY4 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.49■■□□□ 1.03
TTC28Q96AY4 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
TTC28Q96AY4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
TTC28Q96AY4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.49■■□□□ 1.03
TTC28Q96AY4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TTC28Q96AY4 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
TTC28Q96AY4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TTC28Q96AY4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.49■■□□□ 1.03
TTC28Q96AY4 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TTC28Q96AY4 AP006587.3-201ENST00000525742 1516 ntBASIC21.49■■□□□ 1.03
TTC28Q96AY4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TTC28Q96AY4 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TTC28Q96AY4 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.48■■□□□ 1.03
TTC28Q96AY4 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TTC28Q96AY4 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.48■■□□□ 1.03
TTC28Q96AY4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.48■■□□□ 1.03
TTC28Q96AY4 AL390955.1-201ENST00000428694 934 ntBASIC21.48■■□□□ 1.03
TTC28Q96AY4 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms