Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.71■□□□□ 0.59
CPNE4Q96A23 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.71■□□□□ 0.59
CPNE4Q96A23 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.71■□□□□ 0.59
CPNE4Q96A23 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.71■□□□□ 0.59
CPNE4Q96A23 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.71■□□□□ 0.59
CPNE4Q96A23 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.71■□□□□ 0.59
CPNE4Q96A23 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.71■□□□□ 0.59
CPNE4Q96A23 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.71■□□□□ 0.59
CPNE4Q96A23 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 AC231657.2-201ENST00000624556 255 ntBASIC18.71■□□□□ 0.59
CPNE4Q96A23 AC013268.1-206ENST00000638368 961 ntBASIC18.71■□□□□ 0.59
CPNE4Q96A23 AC112229.1-201ENST00000639295 961 ntBASIC18.71■□□□□ 0.59
CPNE4Q96A23 AC073111.5-205ENST00000641717 521 ntBASIC18.71■□□□□ 0.59
CPNE4Q96A23 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CPNE4Q96A23 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
CPNE4Q96A23 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.58
CPNE4Q96A23 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.7■□□□□ 0.58
CPNE4Q96A23 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.7■□□□□ 0.58
CPNE4Q96A23 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CPNE4Q96A23 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 TERF1P5-201ENST00000477545 1207 ntBASIC18.7■□□□□ 0.58
CPNE4Q96A23 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.7■□□□□ 0.58
CPNE4Q96A23 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.7■□□□□ 0.58
CPNE4Q96A23 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.7■□□□□ 0.58
CPNE4Q96A23 AC243732.1-201ENST00000612648 864 ntBASIC18.7■□□□□ 0.58
CPNE4Q96A23 RARRES2P11-201ENST00000635158 484 ntBASIC18.7■□□□□ 0.58
CPNE4Q96A23 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.7■□□□□ 0.58
CPNE4Q96A23 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CPNE4Q96A23 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.7■□□□□ 0.58
CPNE4Q96A23 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CPNE4Q96A23 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CPNE4Q96A23 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.69■□□□□ 0.58
CPNE4Q96A23 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CPNE4Q96A23 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CPNE4Q96A23 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CPNE4Q96A23 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.69■□□□□ 0.58
CPNE4Q96A23 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.69■□□□□ 0.58
CPNE4Q96A23 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CPNE4Q96A23 DUX4L16-201ENST00000555130 1264 ntBASIC18.69■□□□□ 0.58
CPNE4Q96A23 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CPNE4Q96A23 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CPNE4Q96A23 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CPNE4Q96A23 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.69■□□□□ 0.58
CPNE4Q96A23 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.69■□□□□ 0.58
CPNE4Q96A23 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CPNE4Q96A23 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CPNE4Q96A23 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CPNE4Q96A23 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 RBM17P2-201ENST00000616397 1405 ntBASIC18.68■□□□□ 0.58
CPNE4Q96A23 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 LINC00565-201ENST00000562710 2331 ntBASIC18.68■□□□□ 0.58
CPNE4Q96A23 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.68■□□□□ 0.58
CPNE4Q96A23 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CPNE4Q96A23 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.67■□□□□ 0.58
CPNE4Q96A23 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CPNE4Q96A23 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.67■□□□□ 0.58
CPNE4Q96A23 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CPNE4Q96A23 Z98882.1-201ENST00000622160 2253 ntBASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms