Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 AC069544.1-201ENST00000609399 999 ntBASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SLC44A3Q8N4M1 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.03
SLC44A3Q8N4M1 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
SLC44A3Q8N4M1 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SLC44A3Q8N4M1 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SLC44A3Q8N4M1 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 LINC01023-201ENST00000606054 436 ntBASIC21.42■■□□□ 1.02
SLC44A3Q8N4M1 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 POM121L13P-201ENST00000422362 380 ntBASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.41■■□□□ 1.02
SLC44A3Q8N4M1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
SLC44A3Q8N4M1 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms