Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 AL589743.5-201ENST00000616611 1050 ntBASIC21.67■■□□□ 1.06
NPAS3Q8IXF0 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 MCRIP2P1-201ENST00000394346 511 ntBASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPAS3Q8IXF0 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 AC010542.4-201ENST00000563151 1910 ntBASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
NPAS3Q8IXF0 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NPAS3Q8IXF0 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NPAS3Q8IXF0 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
NPAS3Q8IXF0 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NPAS3Q8IXF0 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.64■■□□□ 1.06
NPAS3Q8IXF0 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NPAS3Q8IXF0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.64■■□□□ 1.05
NPAS3Q8IXF0 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPAS3Q8IXF0 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NPAS3Q8IXF0 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
NPAS3Q8IXF0 AC127496.7-201ENST00000625110 1798 ntBASIC21.61■■□□□ 1.05
NPAS3Q8IXF0 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
NPAS3Q8IXF0 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
NPAS3Q8IXF0 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
NPAS3Q8IXF0 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms