Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 ZNRF2P3-201ENST00000424200 374 ntBASIC20.2■□□□□ 0.82
RNF111Q6ZNA4 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF111Q6ZNA4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF111Q6ZNA4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF111Q6ZNA4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF111Q6ZNA4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF111Q6ZNA4 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF111Q6ZNA4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 AL020996.1-203ENST00000536896 2307 ntBASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF111Q6ZNA4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 AC087289.5-201ENST00000586076 3175 ntBASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 AC105233.4-201ENST00000642045 216 ntBASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF111Q6ZNA4 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF111Q6ZNA4 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 AL049796.1-201ENST00000565336 1766 ntBASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF111Q6ZNA4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RNF111Q6ZNA4 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RNF111Q6ZNA4 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
RNF111Q6ZNA4 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms