Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
PPP4R4Q6NUP7 AL391422.3-201ENST00000603791 2761 ntBASIC19.89■□□□□ 0.78
PPP4R4Q6NUP7 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 AL049796.1-201ENST00000565336 1766 ntBASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
PPP4R4Q6NUP7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 AC133561.4-201ENST00000566112 224 ntBASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
PPP4R4Q6NUP7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 AP005212.1-201ENST00000581547 1997 ntBASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.87■□□□□ 0.77
PPP4R4Q6NUP7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 AP001330.3-201ENST00000520123 633 ntBASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PPP4R4Q6NUP7 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PPP4R4Q6NUP7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms