Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 HES6-206ENST00000409574 738 ntTSL 2 BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PDLIM3Q53GG5 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PDLIM3Q53GG5 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 CDCA4P2-201ENST00000441182 718 ntBASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 AC026185.1-201ENST00000445748 174 ntBASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 AC073111.5-205ENST00000641717 521 ntBASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
PDLIM3Q53GG5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 AC026471.6-201ENST00000622954 1905 ntBASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 MAP2K4P1-201ENST00000438453 1195 ntBASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
PDLIM3Q53GG5 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 KRT18P14-201ENST00000534205 1250 ntBASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms