Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
COL28A1Q2UY09 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL28A1Q2UY09 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL28A1Q2UY09 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL28A1Q2UY09 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.79
COL28A1Q2UY09 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 RPPH1-201ENST00000516869 333 ntBASIC20.01■□□□□ 0.79
COL28A1Q2UY09 BX088651.1-201ENST00000540551 451 ntBASIC20.01■□□□□ 0.79
COL28A1Q2UY09 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 AC138907.5-202ENST00000569484 235 ntBASIC20.01■□□□□ 0.79
COL28A1Q2UY09 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL28A1Q2UY09 LINC00565-201ENST00000562710 2331 ntBASIC20.01■□□□□ 0.79
COL28A1Q2UY09 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
COL28A1Q2UY09 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20■□□□□ 0.79
COL28A1Q2UY09 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL28A1Q2UY09 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20■□□□□ 0.79
COL28A1Q2UY09 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
COL28A1Q2UY09 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
COL28A1Q2UY09 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20■□□□□ 0.79
COL28A1Q2UY09 ABHD17AP6-201ENST00000458502 1044 ntBASIC20■□□□□ 0.79
COL28A1Q2UY09 C1QBPP2-201ENST00000528754 825 ntBASIC20■□□□□ 0.79
COL28A1Q2UY09 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20■□□□□ 0.79
COL28A1Q2UY09 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20■□□□□ 0.79
COL28A1Q2UY09 AL445228.2-201ENST00000605589 952 ntBASIC20■□□□□ 0.79
COL28A1Q2UY09 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20■□□□□ 0.79
COL28A1Q2UY09 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL28A1Q2UY09 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL28A1Q2UY09 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20■□□□□ 0.79
COL28A1Q2UY09 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20■□□□□ 0.79
COL28A1Q2UY09 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
COL28A1Q2UY09 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL28A1Q2UY09 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.98■□□□□ 0.79
COL28A1Q2UY09 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
COL28A1Q2UY09 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 AC087742.1-201ENST00000575880 1738 ntBASIC19.97■□□□□ 0.79
COL28A1Q2UY09 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL28A1Q2UY09 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms