Protein–RNA interactions for Protein: Q12829

RAB40B, Ras-related protein Rab-40B, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40BQ12829 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAB40BQ12829 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAB40BQ12829 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAB40BQ12829 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RAB40BQ12829 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
RAB40BQ12829 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.66■□□□□ 0.58
RAB40BQ12829 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAB40BQ12829 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 AL162377.1-201ENST00000618844 1793 ntBASIC18.65■□□□□ 0.58
RAB40BQ12829 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.65■□□□□ 0.58
RAB40BQ12829 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
RAB40BQ12829 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.65■□□□□ 0.58
RAB40BQ12829 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RAB40BQ12829 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.65■□□□□ 0.58
RAB40BQ12829 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.65■□□□□ 0.58
RAB40BQ12829 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RAB40BQ12829 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RAB40BQ12829 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
RAB40BQ12829 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.65■□□□□ 0.58
RAB40BQ12829 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RAB40BQ12829 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAB40BQ12829 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RAB40BQ12829 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.64■□□□□ 0.57
RAB40BQ12829 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAB40BQ12829 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RAB40BQ12829 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RAB40BQ12829 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAB40BQ12829 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.64■□□□□ 0.57
RAB40BQ12829 KRT16P3-201ENST00000439127 1283 ntBASIC18.64■□□□□ 0.57
RAB40BQ12829 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.57
RAB40BQ12829 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RAB40BQ12829 AL138724.1-201ENST00000606771 1088 ntBASIC18.64■□□□□ 0.57
RAB40BQ12829 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
RAB40BQ12829 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAB40BQ12829 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAB40BQ12829 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
RAB40BQ12829 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.64■□□□□ 0.57
RAB40BQ12829 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.64■□□□□ 0.57
RAB40BQ12829 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RAB40BQ12829 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.63■□□□□ 0.57
RAB40BQ12829 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.63■□□□□ 0.57
RAB40BQ12829 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.63■□□□□ 0.57
RAB40BQ12829 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
RAB40BQ12829 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.63■□□□□ 0.57
RAB40BQ12829 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.63■□□□□ 0.57
RAB40BQ12829 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RAB40BQ12829 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
RAB40BQ12829 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.62■□□□□ 0.57
RAB40BQ12829 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
RAB40BQ12829 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RAB40BQ12829 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.62■□□□□ 0.57
RAB40BQ12829 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.62■□□□□ 0.57
RAB40BQ12829 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RAB40BQ12829 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.62■□□□□ 0.57
RAB40BQ12829 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAB40BQ12829 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAB40BQ12829 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.61■□□□□ 0.57
RAB40BQ12829 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RAB40BQ12829 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.61■□□□□ 0.57
RAB40BQ12829 AL512408.1-201ENST00000569378 2000 ntBASIC18.61■□□□□ 0.57
RAB40BQ12829 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RAB40BQ12829 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
RAB40BQ12829 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RAB40BQ12829 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAB40BQ12829 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAB40BQ12829 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.61■□□□□ 0.57
RAB40BQ12829 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RAB40BQ12829 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.61■□□□□ 0.57
RAB40BQ12829 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.61■□□□□ 0.57
RAB40BQ12829 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAB40BQ12829 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RAB40BQ12829 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RAB40BQ12829 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.61■□□□□ 0.57
RAB40BQ12829 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms